Gene Rcas_0450 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0450 
Symbol 
ID5537913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp567682 
End bp568404 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content62% 
IMG OID640892613 
Producthexapaptide repeat-containing transferase 
Protein accessionYP_001430599 
Protein GI156740470 
COG category[R] General function prediction only 
COG ID[COG0110] Acetyltransferase (isoleucine patch superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.667735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGG TCAATCTTTA CCTCTCGCGC CAGGCATCGT CGATTGGTCG GTATATCTGG 
GAGCAGATCG TCCAGGCGGC GGCGGGATGG ATTCCCGGTA TCGTCGGGAT TGGCGTGCGG
GCGGTTTTGT ATCGCGCAAT CCTGCACATG GACGGTGTGG CAGCCATCGA GGAGGGCGTG
CGCATCCGCT TTGCCGATAA TGTGCGCCTG GGGCGCGGTG TGTATCTCGA TCATGGCGTC
TACCTGCACG CCTGTCCTGG CGGTATTTCC ATCGGTCCCG ACAGTTATGT GATGAAGAAT
GCCATCCTGC ACGTCTACAA TTTCCGCGAT CTGCCGCGTG CTGGCATTCG GATCGGCGCC
CGGTCGCTGA TCGGCGAGGC GTGCATTTTG CGCGGGCAGG GCGGCATTAC CATCGGCGAT
GATGTCTTTC TTGCGCCGCT GGTGCAGATG CTGGCGGTCA ACCATGTGTA TCACGACACG
AGCCGACCGA TCAGTCTTCA GGGGATTACC TGCCAGGGGA TTACGGTCGA GAATGGCGCC
TGGATCGGCG GCGGCGCAAT TATCCTGGAC GGGGTCCGCA TCGGTAAAAA CGCTGTTGTT
GGCGCCGGCG CGGTCGTCAC CCGCGATGTG CCCGATTACT GCGTCGCCGT CGGCAATCCG
GCGCGCATCG TGCGCGATCT GCGCAGTCAG CCGGCGGCGC CAGCGAACGT TCCGGTGTAT
TGA
 
Protein sequence
MKQVNLYLSR QASSIGRYIW EQIVQAAAGW IPGIVGIGVR AVLYRAILHM DGVAAIEEGV 
RIRFADNVRL GRGVYLDHGV YLHACPGGIS IGPDSYVMKN AILHVYNFRD LPRAGIRIGA
RSLIGEACIL RGQGGITIGD DVFLAPLVQM LAVNHVYHDT SRPISLQGIT CQGITVENGA
WIGGGAIILD GVRIGKNAVV GAGAVVTRDV PDYCVAVGNP ARIVRDLRSQ PAAPANVPVY