| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0418 |
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| Symbol | |
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| ID | 5537880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 530441 |
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| End bp | 531658 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640892580 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001430567 |
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| Protein GI | 156740438 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.36258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGACT TTTGTGCTAT CTTACCATAT GCACATTATA ATAGGCCGTT ATGCACAGAA
GGCTGGTGGA ATGTGAAAGA ACCCCTCGAC TCCTTCCTGG CCACGGCCCA CGAGTCGCAG
ACCTCTCCGC GCAATCACGT TCGTGTCCAT CGTCCTGTTG CCGAACCGGC GTCCGAGACT
GTCGAACGAA TACTTGAGCG TACTGTCGGC GATCACGATC TCTTCGATCA CCACGCCGAC
CCGTGTCATG CCCTCCACGA GCAGGACGAC GACTCGCTGG ATCACGATCT CGACGCCGAT
GTTGACGGCA TAGGAGTCGA TGATCCGGTC CGGGTCTACC TCCGTGAGAT CGGACGGGTC
AACCTGTTGA CTGCACAGGA AGAGATCATG CTGGCGCAAC AGGTCGAACG CGGCGAGCAG
GCGAACGAAC GGTTGCAGAA TGGCGATTAC ACTCCGGTTG AACGCCTCCA ACTTCACCGC
TGGGTTCAGG AAGGTCAGGC GGCGCGCGAG CGCCTCATCC AGGCGAACCT GCGCCTGGTC
GTATCCATTG CCAAAAAGTA CCTTGGGCGC GGTATGTCCC TGCTCGACCT GATCCAGGAG
GGCAACATCG GTTTAATGCG CGCCACCGAA AAGTTCGATT ATCGCAAAGG GTACAAGTTT
TCGACGTATG CCACGTGGTG GATCCGCCAG GCGATCACGC GCGTGATCGC CGATCAGAGT
CGCACGATCC GCCTGCCGGT GCACGTTGGC GAAACGATCA ATCGGGTGAT GCGCACCAGC
AACCGCATCC AGCAGACGAC CGGGCGCGAC CCGACGCCGG ACGAAATCGC GCTTGAACTC
GGCATTCCGG TTGAGAAGGT GCGGCGGGTG CTGGAAGCCG CGCGCCAGAC GATCTCGCTC
GAAACTCCGA TTGGCCCAGA AGGGGATTCG GTGCTGGCGG ATTTCATCGA GGATGGCAAG
GGCGCGACGC CGATGGAAAG CGCATCGAGC CATATTCTGC GCGAACAGAT CGACAGTGCG
CTCGAGAAGT TGCCCGAACG CGAACGCCGC ATCATTCAGT TGCGCTATGG GTTGTACGAT
GGGCACTACC GCACTCTGGA AGAGGTCGGG CGCGAGTTTG GCATCACTCG CGAGCGCATT
CGTCAGATCG AGGCGCGTGT GCTGCGCAAG TTGCGCCATC CGCACTATGG GCGCGGTTTG
CGTGGTTATC TCGAATAA
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| Protein sequence | MCDFCAILPY AHYNRPLCTE GWWNVKEPLD SFLATAHESQ TSPRNHVRVH RPVAEPASET
VERILERTVG DHDLFDHHAD PCHALHEQDD DSLDHDLDAD VDGIGVDDPV RVYLREIGRV
NLLTAQEEIM LAQQVERGEQ ANERLQNGDY TPVERLQLHR WVQEGQAARE RLIQANLRLV
VSIAKKYLGR GMSLLDLIQE GNIGLMRATE KFDYRKGYKF STYATWWIRQ AITRVIADQS
RTIRLPVHVG ETINRVMRTS NRIQQTTGRD PTPDEIALEL GIPVEKVRRV LEAARQTISL
ETPIGPEGDS VLADFIEDGK GATPMESASS HILREQIDSA LEKLPERERR IIQLRYGLYD
GHYRTLEEVG REFGITRERI RQIEARVLRK LRHPHYGRGL RGYLE
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