| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0411 |
|---|
| Symbol | |
|---|
| ID | 5537873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 518610 |
|---|
| End bp | 519761 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640892573 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_001430560 |
|---|
| Protein GI | 156740431 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.215728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCT GTGATGAATT GCACTCGAAA ATGGAAGAAC CCATTCGTCC GCTTGTCGAC
GTCAAACACG CCCATCACCT CTCGAATTGG TTGTGGATCG TCTGCGGGAT TCTGCTCAGT
GGTTCGGTCG CATTAAGCAA GATTGCCCTT TACTTGCCCC TCACGGCGCA AGCGGAAGGG
CGGATTGCTC GCATTCGCCG TTGGTTGAAG AATGTGTACG TCGATGTCTG GCAATTCTAC
CGTCCCCTGC TGGAGAAGGT GTTGCAAGGA TGGCAAGCCG CAGAGGCGGC GGTGATCCTG
GACGGCGTCA TGGTCTTCGG CGACCGCTTG CAGATTTTCC GTCTCTCCTT GCGACATGGC
AGTCGTGCCA TCCCTTTGTC CTGGGTGGTC GTGCCGGGCA AAGGGCTGAC CAGCGTCGAA
CGGTTGCGTC CATTGATCCA GCGGGCCGCA GAGTTCCTGG CCCCACGCGT CGGCGCCGTT
GTGTTTCCGG CCGATCGCGG CTTTCGCGAT GTAGAATGGG CCGCTCTGTG TCTGGAAGTC
GGTTGGCATT ATGTCATCCG ACTGGCCAAC AACACCCTCA TCACTCTGGA GGATGGCCGC
CGCCTGTCCA TCGCGGCGCC GGGTGTGCCG CCTGGGGAAG CCTGCTATTG GCGGAACGCG
GCCATCACCC AGTCGCAGGA CTGGCCTGCC AACCTCTCTG TAACCTGGAC CAAAGGCGCA
CGCGGTCAGG CGCCGGAATT GCTGGCCGTG ATGAGCGATC GGCGCGCCTG CAACCAGCGG
TTGCGTGAAT ATGGTTGGCG TATGAGCATT GAAGAGAGTT TCCGCGATGA CAAATCGGGC
GGCTTTGACC TGGAACATAC ACGCCTCCAA GACCCGCAAC GGCTAGAACG CCTGTTGTTG
GCGGTCGCAA TCGCCACACT TTGGCGTCAC GAATTGGGCG AGCAGGCGCT CCACGATCAC
AGCGTCCAGG CCGAACTCGA CCCAGGCGGC AAGCGCCGCG AACTCAGCAT CTTCCAACTA
GGCCTGCGAT TCCTCAGGCG GTGTTTGTTA GCGCTTACCA CCGCGCGCTT ACCCAAATTG
CGGTTGGTTT TGTCCAACTT GGCGCTCGAG CCCCTCTCAC CAAGACACCT GGCCAAGGAG
AAATGTCAGT GA
|
|---|
| Protein sequence | MSACDELHSK MEEPIRPLVD VKHAHHLSNW LWIVCGILLS GSVALSKIAL YLPLTAQAEG
RIARIRRWLK NVYVDVWQFY RPLLEKVLQG WQAAEAAVIL DGVMVFGDRL QIFRLSLRHG
SRAIPLSWVV VPGKGLTSVE RLRPLIQRAA EFLAPRVGAV VFPADRGFRD VEWAALCLEV
GWHYVIRLAN NTLITLEDGR RLSIAAPGVP PGEACYWRNA AITQSQDWPA NLSVTWTKGA
RGQAPELLAV MSDRRACNQR LREYGWRMSI EESFRDDKSG GFDLEHTRLQ DPQRLERLLL
AVAIATLWRH ELGEQALHDH SVQAELDPGG KRRELSIFQL GLRFLRRCLL ALTTARLPKL
RLVLSNLALE PLSPRHLAKE KCQ
|
|---|
| |