| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0368 |
|---|
| Symbol | |
|---|
| ID | 5537830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 458834 |
|---|
| End bp | 459877 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640892531 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001430518 |
|---|
| Protein GI | 156740389 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0497868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.291666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAT CAACGTTCCT GATTACTGGC GGCGCCGGTT TTCTGGGGAT TAATCTGGTC
CGCTATCTCC TGGAGCGTGG GCATCCGGTC GTTTCGCTTG ACATTGCCGA TTTCAACTAC
CCCGAACGCA ACCGGGTCAG GGCAATCAAG GGTGACATTC GTGACCGCTC GAGCGTTGAC
CGCGCAATGG AGGGCGTGCA GATTGTTGTG CATGCAGCGG CAGCGTTGCC GTTATACAAA
AAGGAAGATA TCTTCTCCAC CGACCTCGAC GGCACACGAA ATGTGCTGCA ATCGGCGTTG
GAACACGGCG TCGAACGGGT GATCCATATT TCTTCGACTG CCGTCTATGG CATTCCTGAT
CATCACCCGC TCTATGAGGA CGACCCGCTC CATGGCGTCG GTCCCTACGG CGAGGCAAAG
GTGAAGGCGG AACAGATCTG CCTGGAATAT CGCGCCAAAG GGATGTGCGT GCCGATCATT
CGTCCGAAGT CGTTCGTCGG TCCTGAGCGT CTTGGCGTGT TTGCGCTCCT CTACGATTGG
GCGAAGGATG GGAAGAATTT TCCCATGATC GGCAGCGGCA ACAATCGCTA TCAGTTGCTC
GACGTCGAGG ACCTGTGCGA GGCGATCTAT CGCTGTGCGA CGCTTGATCG TGATCGGGTG
AATGATACGT TCAACATTGG CGCGAAAGAG TTTACGACGA TGCGCGAGGA TTATCAGGCG
GTGCTGGACG CTGCCGGTTT TGGGAAGAAA ATCATCCCCT TCCCGGCGGC GCCGGTGATC
TGGACGCTGC GCATTCTGGA GGCGCTCCGC CTCTCGCCAC TCTACAAGTG GGTGTACGAA
ACCGCTGCTA CGGACTCCTT CGTGTCGATT GAGAAAGCCG AACGGGTGCT TGGATTCACG
CCAAAGTATT CGAACAAAGA GGCGCTCGTT CGTAACTATC GCTGGTATAT CGAACACGTG
CAAGAGTTCG AAGGCGCTTC CGGCGTCTCG CATCGTGTTC CGTGGAAGCA GGGCGTACTG
CGGTTGGCAA AAATCCTCTT CTGA
|
|---|
| Protein sequence | MTPSTFLITG GAGFLGINLV RYLLERGHPV VSLDIADFNY PERNRVRAIK GDIRDRSSVD
RAMEGVQIVV HAAAALPLYK KEDIFSTDLD GTRNVLQSAL EHGVERVIHI SSTAVYGIPD
HHPLYEDDPL HGVGPYGEAK VKAEQICLEY RAKGMCVPII RPKSFVGPER LGVFALLYDW
AKDGKNFPMI GSGNNRYQLL DVEDLCEAIY RCATLDRDRV NDTFNIGAKE FTTMREDYQA
VLDAAGFGKK IIPFPAAPVI WTLRILEALR LSPLYKWVYE TAATDSFVSI EKAERVLGFT
PKYSNKEALV RNYRWYIEHV QEFEGASGVS HRVPWKQGVL RLAKILF
|
|---|
| |