| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0365 |
|---|
| Symbol | |
|---|
| ID | 5537827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 453152 |
|---|
| End bp | 454486 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640892528 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001430515 |
|---|
| Protein GI | 156740386 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.149605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.435495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTACG AGTGGCTGGC CATTGCCATG TTCGTCGGGT TCTTCTTTCT GCTGATCAGT
GGATACCCGG TGGCCTTCTC CTTTGCCGGA ACAGCGATCG TGTTCGGTCT GATCGGGTTG
GCGCTCGATG CCGTCAAAAT CGACCTGCTG CGCCTCTTGC CAAATCGCTG GTTCGGCACC
ATGTCCGATT TTACGCTGCT GGCGATACCC TTTTTTATCT ACCTTGGTTC AGTGCTGGAA
AAATCCGGTC TGGCGGAGGA ATTGCTTGAA ACGGTCGGGA TTCTGCTTGG TCCGCTGCGC
GGCGGCATCG CCCTCGCAGT CGTTGTGGTA GGAACGCTGC TGGCAGCGAC CACTGGCGTC
GTTGCGGCGA CTATTATTGC TATGGGGTTG ATCTCGCTGC CGATCATGGT TCGTCTGGGA
TACGATAGAG GTCTGGCGAC CGGCGCTATT ACGTCGTCGG GCACGCTGGC GCAGATGATT
CCTCCAAGCC TGGTCCTTGT TGTGCTCAGC GATCAGATTG GCGTTTCGGT CGGCGACCTG
TTCGCTGGTG CGTTGATTCC GGGCTTGATG CTGGCAGGGT CGTATGCGCT TTACTGTGTG
GTGATTGCCT ATCTGAAGCC GGAACTGGCG CCGCCGTTGC CGCTGGAGAT GCGCCAGATT
CGTGGTTGGG CGCTCTTCAT GAAATCGTTG AAGGCGCTGG TGCCGCCGAT TGCGCTGATC
TTCGCCGTGC TCGGCAGTAT TTTCTTCGGC CTGGCGACGC CGACGGAAGC CGGTTCGGTC
GGCGCGGTCG GCGCCATCCT CCTGGCCTGG GCGAATAAAC GCCTGAACTG GAAATTGCTG
GCGGACTCGG CGCTCAGTAC GGCGCGCACA AGTACGCTGG TGATTATGAT TCTGTTCTGC
TCGACGTTCT TCTCGTTGAT ATTCGAGGCG CTGGGCGGCA CGAAATTTGT GACTGAGATT
CTGACCGGAC TGCCGGGCGG GATCGTGGCA TTTATTATTG TCAGCAATAT TGTCGTCTTT
TTGCTGGGCA TTTTCCTTGA GTTTGTCGAG ATTTGCTTTA TTGTGATGCC GCTCTTTGTT
CCTGCCGCCA ATGCGCTTGG CATAGACATG ATCTGGTTCG GCATTATGAT GGCGGTCAAT
CTGCAAACGG CGTTTATTTC GCCGCCGGTC GGCTTTTCGC TCTTCTACCT CCAGAGCGTT
GCGCCGAAAG ATGTCGAGAC TGCCGACATC CATAAAGGGG CGCTGCCATT CATGGCGCTC
CAAATCGTCG TGCTGATCCT GGTCATTCTG TTCCCCGGCA CAGTGACGTG GCTGGTCGAG
CGGGTGCAGG GGTGA
|
|---|
| Protein sequence | MGYEWLAIAM FVGFFFLLIS GYPVAFSFAG TAIVFGLIGL ALDAVKIDLL RLLPNRWFGT
MSDFTLLAIP FFIYLGSVLE KSGLAEELLE TVGILLGPLR GGIALAVVVV GTLLAATTGV
VAATIIAMGL ISLPIMVRLG YDRGLATGAI TSSGTLAQMI PPSLVLVVLS DQIGVSVGDL
FAGALIPGLM LAGSYALYCV VIAYLKPELA PPLPLEMRQI RGWALFMKSL KALVPPIALI
FAVLGSIFFG LATPTEAGSV GAVGAILLAW ANKRLNWKLL ADSALSTART STLVIMILFC
STFFSLIFEA LGGTKFVTEI LTGLPGGIVA FIIVSNIVVF LLGIFLEFVE ICFIVMPLFV
PAANALGIDM IWFGIMMAVN LQTAFISPPV GFSLFYLQSV APKDVETADI HKGALPFMAL
QIVVLILVIL FPGTVTWLVE RVQG
|
|---|
| |