| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0362 |
|---|
| Symbol | |
|---|
| ID | 5537824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 447823 |
|---|
| End bp | 451050 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892525 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001430512 |
|---|
| Protein GI | 156740383 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.574464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.999715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCACGTT CGTCTGTTTC GATCTGGTGT GAGCGCGTCA TCGAGGGTGG CTGGCTGCTT
GCCCTTTTGC TGATACCAAC CTACTTCAAT TTGTTGTCGG CGCGTCACTT CGAGCCGGAC
AAAGCAACGA CGTTGCGCTC GATTGTCATG GTCATGCTGG CGGCTGCGCT GATCGATGCG
CTCGAGCGTT TTGCAAATCG GCGCGTTACC GTAGAAGACG CATCCAAACC CCCTTGGTGG
CGGCGCATCG CTTCCATACC GCTTGCTGTG CCGACCAGTA TGTATGCGGC AGTCTTTCTC
CTGGCGACCG CAGTGTCAAT CGCGCCGTCG GTCAGTTTCT GGGGATCGTA CCAGCGCCTT
CAGGGAACCT TCACCAACCT GTCGTACATC GGACTGGGCG TGCTCATTGC CTTCTATCTC
CGTCGTCGTG AGCAGATTGA TCGCCTGGTG ACGATCATGA TCCTCGCCGG TCTGATCGCT
GCATGGTACG GTCTTGTGCA GCATGTGCAA CTCGATCCGC TTCCCTGGCG CGGCGATGTC
GTGTCGCGTG TGGCATCCAC GATGGGGAAC TCGATTTTTG TGGCAGCCTA TATGATTATG
GTGCTGCCCT ATGCGCTCTA CCGTGGAGTC GTCGCTCTCT ATCAGGCGCG GAACGCTGAT
GCTTTGCCCT CCCGTCCGTC CATCGATCTG GGATGGGGGG CGGCATATGT CCTCCTGGCG
CTCTCTGCTC TGGCGCTGGT GTTTGCGGCG ATGATGTTCG GCGCCGTCGT GCGCGCCGCC
GATCTGCGCT ACTGGTGGGT TTACCCCGGT GCGCTGATTA TCGCCGGCGG GTTGTTCCTG
CTGATTGCGC TGGCGCCGCA TCGCGCCGAA CGCCTGACCT TCCGGACACT CATTCCGGGC
ATTCTGCTGC TCGCGTATGT CGTTTTCCTC GGTGTGTCGT ATGCTCTGGG GCAGGGACCG
AATCAGCGCG TGGTTCCGCT CGAAGGTCGT CCTGGCGTCG AATGGCCCCT CTGGTTGGGC
ATCGCTGTGG CGCTCATGGC GTCCGGGTAT GCGCTGGTGA TCCTGCTTCC CCGGCGCGCA
AACGGGACCT CGCGCCTTGG TCTCGTCCTC GAATCGGTCG GCGCATGGAC CATTGCAACG
TTGCTTCTGG CAGCCATCTT CTTCACGCAG AGCCGTGGAC CGTGGCTGGG CGGCTTTGCG
TCGCTATTTG TATTCTTTAC CCTGCTCCTG ATTTTGGCGC TGCGTCGGGC GCAGCAGCAG
AATCAGGAGC GCGCGCGCCT CTGGCGCAGG TTGCTGATCG GCGAAGTGGT GGTCGCGCTT
GCGCTGGCAG GCTTTCTGGC AGCCTTCAAT CTTTCCGATG CACCGCTATT CCAGCAGTTG
CGTGACGTTC CGTACATCGG TCGCATGGGG CGTCTGCTCG AAGTTGAGAC CGGCACCGGT
CGAGTGCGCT GGTTGATCTG GTTTGGCGAC GACAAAGCCG GCGGCGCAGC CGCGCTCATT
CGCTCCGATC CGCTTCGCAT GATTGTCGGT TGGGGTCCTG AAACCATGTT TGTGGCGTAC
AACCCCTTTT ATCCTCCGTC GCTGACTAGC CTGGAAGCAC GGACAGCGTC GCCGGATCGG
TCGCATCAGG CGTACCTCGA TGAAATGATC AACAAGGGCC TGCTGGGTCT CATCAGTTAT
CTGTTCCTGT TGTTCAGTTT CTTTGCGCTG GCATGGAGTC TGGCGAATCG TGTGACGGAC
TGGGGTCTCC AGGTGCTGAT TACGGCGGCG ATTGCTGCGG TGACGGCGCA TGTTGTCGAA
GGGTTGACCG GTATTCCCAT TGTATCGACG CTCATGCTTC AATGGGTGTC GTTCGCGCTT
GTAGTGGCGG TTGGCGCCAT CGCAGGCGAG TACCGTATGC CGGGTGCTGC GCCGGTTCAC
CCGGGCGCTG GACCGGCGCC CGCTGCACCT GTTCCGGCAA CGTCGGTGCG GCAGCGCGGC
GGACGACGTG CTCAGGCGGT CAAACGTGGA TCATCGTCAA CCGGTCGATC AACGGTGCCA
TCCCGCGTCC GCTCCGAGGG ACGCGCCGCA GCGATGGGGG TCTATGCCAT CATTCTGATC
CTGGTCTTTT TCGGGGTCTG GACGTCCAAT GTGGACAGCG TGCTGGCGGA CATGCGATTG
CAACAGGCAC AGGGGTATAT CGACAGCCCA GGCGCCCGAC TGGAACAACA GATCGTCGGT
GCAAGTTATC TGCTCGATGC CATTCGCATG GAGCCGGATC AGGATTTCTA CTACCTGACG
CTCGGTCGGT CGTTGATGAC CATGGTCTCA TTGCGCGCCG ACGAAGCGCG CCGCTCTGGC
GCTTCACTTG GGCAGATCGA TCCGAACGCC AGTGTCGCCA CCCTGTTGCA ACTCGATGAC
ACAGCGGAAC TTCAGGCGTT TGTGCTGAGG CGCACGCCGA TGGAACTCCT CAGTTACGCG
CGCGCTGTTC TGCTTCGCGC CCAGCAGATC GCGCCGCTCA ACAAGGACCA TGCGGCCAAC
CTGGCGCGCA TGTACAACTT CTGGTATCAG ACTCTCAGCG GTGGTCAGGA TCGCGACGCA
CTCGCGCAGG CGATCGAGTG GTATCAACGG GCGCATGCGA TTGCGCCGCA AGATGTCGCC
ATTCTGAACG AGTATGCCAG CGCTGTCGCG CGATCCGGCG ACTACGACAA ATCCCTGGCG
CTGCTCGAAA CATCGCGCAA TCTTGATCCG CTCTACAACG ATACCCTGTT GCGGATGGGC
GAAGTTCTGC GGGCGCAAGG TCGCTTTGCA GAAGCCGTCG ATCAGTATCT GACGCTGCTG
GATCGCGATC CGTCTGCACT TAATGGGCAG ATAAGCGCAA TTGCAACGGT GCTTTCGTCC
GACCCGGTAC AATTGGCTCG CCTGCGCGAT CGATACCGTG CAGCACAGGC GTCGCGCCCC
GATGATCCGC AACTGGCGTC GATTGTTGGT CTGCTCTCGG TGCGGTCTGG CGACCTCGAA
ACCGCCGCAA GCGCGTTTGC CGAAGCGGTG CGATTGCAGC CGGACAACCT GGAAGCGCGC
CAGAACTATA CCATTGTGTT GAGCGATCTC CTGCGGTATG ATCAGGCGGC GCAGCAGGCG
CAAGAGTTGC TGACGCTCGC ATCGCAGCGT CAGGAGACGA CCGATCAACA ACGCGCGGCA
ATCGAGGCGT TGCTCGGCTA CCTTCGGCAG CGCGCCAATG GCGGTTGA
|
|---|
| Protein sequence | MSRSSVSIWC ERVIEGGWLL ALLLIPTYFN LLSARHFEPD KATTLRSIVM VMLAAALIDA
LERFANRRVT VEDASKPPWW RRIASIPLAV PTSMYAAVFL LATAVSIAPS VSFWGSYQRL
QGTFTNLSYI GLGVLIAFYL RRREQIDRLV TIMILAGLIA AWYGLVQHVQ LDPLPWRGDV
VSRVASTMGN SIFVAAYMIM VLPYALYRGV VALYQARNAD ALPSRPSIDL GWGAAYVLLA
LSALALVFAA MMFGAVVRAA DLRYWWVYPG ALIIAGGLFL LIALAPHRAE RLTFRTLIPG
ILLLAYVVFL GVSYALGQGP NQRVVPLEGR PGVEWPLWLG IAVALMASGY ALVILLPRRA
NGTSRLGLVL ESVGAWTIAT LLLAAIFFTQ SRGPWLGGFA SLFVFFTLLL ILALRRAQQQ
NQERARLWRR LLIGEVVVAL ALAGFLAAFN LSDAPLFQQL RDVPYIGRMG RLLEVETGTG
RVRWLIWFGD DKAGGAAALI RSDPLRMIVG WGPETMFVAY NPFYPPSLTS LEARTASPDR
SHQAYLDEMI NKGLLGLISY LFLLFSFFAL AWSLANRVTD WGLQVLITAA IAAVTAHVVE
GLTGIPIVST LMLQWVSFAL VVAVGAIAGE YRMPGAAPVH PGAGPAPAAP VPATSVRQRG
GRRAQAVKRG SSSTGRSTVP SRVRSEGRAA AMGVYAIILI LVFFGVWTSN VDSVLADMRL
QQAQGYIDSP GARLEQQIVG ASYLLDAIRM EPDQDFYYLT LGRSLMTMVS LRADEARRSG
ASLGQIDPNA SVATLLQLDD TAELQAFVLR RTPMELLSYA RAVLLRAQQI APLNKDHAAN
LARMYNFWYQ TLSGGQDRDA LAQAIEWYQR AHAIAPQDVA ILNEYASAVA RSGDYDKSLA
LLETSRNLDP LYNDTLLRMG EVLRAQGRFA EAVDQYLTLL DRDPSALNGQ ISAIATVLSS
DPVQLARLRD RYRAAQASRP DDPQLASIVG LLSVRSGDLE TAASAFAEAV RLQPDNLEAR
QNYTIVLSDL LRYDQAAQQA QELLTLASQR QETTDQQRAA IEALLGYLRQ RANGG
|
|---|
| |