Gene Rcas_0349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0349 
Symbol 
ID5537811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp430457 
End bp432244 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content59% 
IMG OID640892512 
Productthreonyl-tRNA synthetase 
Protein accessionYP_001430499 
Protein GI156740370 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0441] Threonyl-tRNA synthetase 
TIGRFAM ID[TIGR00418] threonyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.129605 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGTCA AACCAGAAAC CGATCCCTAC TACCGCCTGC GTCATTCCGC TGCGCATGTG 
ATGGCGCAGG CCGTGCTGGA ACTGTTCCCG GAAGGGAAAA TTGCGATTGG TCCGCCAATC
GAAGATGGGT TCTACTACGA TTTCGATCTG CCGCGTCCGT TGACGCCTGA TGACCTGGAA
GAGATCGAAA AGCGTATGCG CCGGATTATC GCCGGAAAGC ACCCGTTCGT CTACCGGGTC
GTCGATCCCG ATGAGGCGCG CGCGCTGTTC CGCGACCAAC CATACAAACT GGAGTTGATC
GACGGACTGC TCCACGGTCA GGACGAATAC GGCGAACAAG GAAGCACAAA CACGGTCATT
TCGACGTACA GGCACGATAC GTTCGAGGAT CTCTGCCGTG GTCCGCATCT GGAACACACC
GGACAGATCC CGCCGGATGC CTTCAAGTTG ATGAGCGTGG CCGGAGCGTA CTGGCGCGGC
GACTCGAACC GTCCAATGCT CCAGCGGATC TACGGTACCG CGTGGAACAG CAAAGAGGAA
CTCGACGCCT ATCTTCACCG TCTCGAAGAA GCAAAACGCC GCGATCACCG TCGGATCGGG
AAAGAACTTG GCCTGTTCTA CTTTTCCGAG GATATTGGTC CCGGTCTGCC GCTCTTCACG
CCAAAGGGGG AAATGCTGCG CCATCTGATG GAGTCGTATG TGCGCGAGGT TCAGACGCGC
TATGGGTATC AGCATGTCTG GACCGGGCAT ATCGTCAAAG AGACGCTGTA CAAGAAGTCC
GGGCACTATG AGGCGTACCG CGAGAACATG TTTCCTCCCA TGATCGAGGA TGAGGAGCAC
GTCTACCGCC TGAAGCCGAT GAACTGCCCC AGCCATATGA CCCTCTACAA GGAGATGGGG
ATTCACTCGT ACCGCGATCT GCCGTTGCGC TTTGCGGAGT TTGCAACGCT CTATCGCTAC
GAGGAACGCG GCACGCTCAC CGGTTTGACG CGGGTGCGGG CGCTGACGCA GGACGACTGT
CATATTTTCT GCCGTCCTGA TCAGATCGAA GAGGAGTTCG GGCTGGCGCT GCGTCTCATT
CGTGAGGTGC TCGAAACATA CCGCTTCACC AATTACCGGG TGCGTCTCTC GCTGCGCGGC
GAAGGCGGAA AGTATATCGC GGACGACGAG GCGTGGGATT TGGCGGAGCG TGCGCTGCGC
ACCGCGCTCG ATCACTACAG TGTGCAGTAC GAGGAGGCGC CCGGCGAAGC GGCAATCTAT
GGACCGAAAG CCGATTTTCT GGCACATGAT GTTCTGGGGC GCGAATGGCA GTTGTCGACC
ATCCAGGTCG ATTTCATTCA GCCGCGTCGT CTGGGTCTGG AGTATATTGC GGAAGATGGT
CAACCGCGCA CGCCGGTTGT GTTGCACCGT GCTGTCACCG GCACCACCGA GCGGTTCATG
GGGGTGTTGA TCGAGCACTT CGCTGGCGCG TTTCCGCTCT GGTTGGCGCC GGTTCAGGCA
GTGGTCATTC CGATCTCCGA CGAGCGACAC GGCGCCTATG CCGCCGACGT GGGGCGGCAA
CTGACCGCAG CCGGATTGCG GGTCGAGGTT GATCTGAGCA GGGAGCGCAT GCAGGCAAAG
ATTCGTCAGG CGCAGTTGCA GAAGATACCG TATATGCTTA TAATCGGCGA TAGAGAGCAG
CATGCCGGCG CCGTCGCCGT GCGCTGCCGG TCGGGTGAAG ACCTCGGCGC AGTGCCGGTT
GCGGCGTTCA TTGCGCGCGC CCGCGCTGAG ATTGAAGCAA AGGCATAA
 
Protein sequence
MPVKPETDPY YRLRHSAAHV MAQAVLELFP EGKIAIGPPI EDGFYYDFDL PRPLTPDDLE 
EIEKRMRRII AGKHPFVYRV VDPDEARALF RDQPYKLELI DGLLHGQDEY GEQGSTNTVI
STYRHDTFED LCRGPHLEHT GQIPPDAFKL MSVAGAYWRG DSNRPMLQRI YGTAWNSKEE
LDAYLHRLEE AKRRDHRRIG KELGLFYFSE DIGPGLPLFT PKGEMLRHLM ESYVREVQTR
YGYQHVWTGH IVKETLYKKS GHYEAYRENM FPPMIEDEEH VYRLKPMNCP SHMTLYKEMG
IHSYRDLPLR FAEFATLYRY EERGTLTGLT RVRALTQDDC HIFCRPDQIE EEFGLALRLI
REVLETYRFT NYRVRLSLRG EGGKYIADDE AWDLAERALR TALDHYSVQY EEAPGEAAIY
GPKADFLAHD VLGREWQLST IQVDFIQPRR LGLEYIAEDG QPRTPVVLHR AVTGTTERFM
GVLIEHFAGA FPLWLAPVQA VVIPISDERH GAYAADVGRQ LTAAGLRVEV DLSRERMQAK
IRQAQLQKIP YMLIIGDREQ HAGAVAVRCR SGEDLGAVPV AAFIARARAE IEAKA