| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0339 |
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| Symbol | |
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| ID | 5537801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 421132 |
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| End bp | 423015 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640892502 |
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| Product | GTP-binding protein TypA |
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| Protein accession | YP_001430489 |
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| Protein GI | 156740360 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.034053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCGCC CCGACCGCAA CGGTCGGGGC ATTTTGCGGA TAAACGAGAT GATTCGAAGA
AACGACATTC GTAACATTGC CATTATTGCC CATGTTGACC ACGGCAAAAC GACCCTGGTC
GACGGGTTGC TGCGCCAGGG GCGCATTTTT CGTGAGAATC AACCGGTCGC CGAGCGTGTG
CTGGACTCGA ATGACCTTGA GCGCGAACGC GGCATTACGA TCATGGCGAA GAACACCGCC
GTCACCTACC GCGGCGTCAA GATCAATATC GTCGATACGC CGGGGCATGC CGACTTCGGC
GGTGAGGTCG AGCGGGTGAT GAATATGGTC GATGGCGTGC TGCTGCTGGT CGATGCAGTC
GATGGTCCTA TGCCGCAAAC GCGGTTCGTT CTGCGCAAGG CGTTGCAGGC CGGGCATCGC
GCAATCGTCG TCGTCAACAA GATCGACCGT CCGAATGCGC GCCCGAACCA CGTCGTCAAT
GAAACCTTCG ACCTGTTCAT CGAACTCGGT GCGACTGATG AACAGGCTGA GTTTGCCACG
ATTTACACCA ATGCGCTCAA AGGGGTCGCC GGACGATCGC CGCTCAAAAT CCACGACTCG
CTCGAGCCAC TGTTCGATGC TATCCTCGAT CAGATCCCCG GTCCACAGGT CGATCCGGAC
GGTCCGGCGC AGTTGCTGGT GACGAACACG GTATACGACG ATTACAAAGG CAAGATTCTG
ATCGGGCGCT TGCGGCGCGG GACATTGCGC AAAGGACAGG CGGTGGCGCG TATCGCGCGC
GATGGCAGCG TGATCCCCGC AAAGGTCAGT CAATTGTTCG TCTTCAATGG CCTGGACCGG
AACGAGATCG AGGAGGTCGC CGCCGGCGAC ATTATTGCCA TTGCAGGGAT CGGTGACGCC
AGCATTGGCG ATACGATCGC CGATGCGCAA TGCCCGGAGG CGCTGCCATC AATTGCGGTC
GAAGAGCCGA CGGTGCGCAT GACGTTTAGC GTCAATACCA GCCCCTTTGC CGGACGTGAA
GGAACCCACG TCACCTCACG CACATTGCGC GAGCGACTCT ACCAGGAACT CGAGCGCGAT
GTGGCGCTGC GTGTCGCCGA TACTGACTCG CCTGACGCTT TCATCGTCAG TGGACGCGGT
GAACTCCACC TCACGATTCT CATCGAGACG ATGCGCCGCG AGGGGTATGA GTTCCAGGTC
TCGCGTCCTG AGGTTATTTT CAAAGAGATC GATGGGGTCA AATACGAACC AATCGAGCAG
GTCGAACTGG AAGTCGCCGA ACCATATCAG GGCGCCGTCA TCGAGTTGAT GGGTCAGCGG
CGTGGGCAGA TGCGCGATAT GAGCATCCGC GATGGCGGAT CGGTGCATAT GATTTTCCAC
GTGCCAACCC GCGGTCTGCT TGGCTTCCGC CAGACGTTCC TGACCGCCAC GCGCGGCGAG
GGGGTGATGA ACTCGTTGTT CATCGGGTAT GAACCGCTGG CAGGCGAGAT CGTCACGCGA
TCCAACGGCT CGCTCGTCGC GTCGGAACGT GGCGTCGCCA CTGCCTATGC GCTCAACCAG
GCTCAGGAGC GCGGAACACT CTTCATCACA CCCGGCACGG AAGTCTACGA AGGCATGATT
GTCGGTCAGC ACATCCGCGA GCGCGACCTG GAAGTAAACG TCTGTCGCCG CAAACATCTG
ACGAACATCC GCTCCTCGAC GGCGGAAGAG GGCATCCGAT TAGAAACGCC GCGCGTGCTG
AGTCTTGATG ACGCCATCGA GTACATTAGC GACGATGAGT TGGTCGAAGT GACGCCGAAG
AGCATCCGGT TGCGGAAACG ATTGCTCACC CTCACCGAGC GCCAGCGCGA ACAGAAGCGG
CGAGAGACCG GGGTTAAGAG TTAG
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| Protein sequence | MYRPDRNGRG ILRINEMIRR NDIRNIAIIA HVDHGKTTLV DGLLRQGRIF RENQPVAERV
LDSNDLERER GITIMAKNTA VTYRGVKINI VDTPGHADFG GEVERVMNMV DGVLLLVDAV
DGPMPQTRFV LRKALQAGHR AIVVVNKIDR PNARPNHVVN ETFDLFIELG ATDEQAEFAT
IYTNALKGVA GRSPLKIHDS LEPLFDAILD QIPGPQVDPD GPAQLLVTNT VYDDYKGKIL
IGRLRRGTLR KGQAVARIAR DGSVIPAKVS QLFVFNGLDR NEIEEVAAGD IIAIAGIGDA
SIGDTIADAQ CPEALPSIAV EEPTVRMTFS VNTSPFAGRE GTHVTSRTLR ERLYQELERD
VALRVADTDS PDAFIVSGRG ELHLTILIET MRREGYEFQV SRPEVIFKEI DGVKYEPIEQ
VELEVAEPYQ GAVIELMGQR RGQMRDMSIR DGGSVHMIFH VPTRGLLGFR QTFLTATRGE
GVMNSLFIGY EPLAGEIVTR SNGSLVASER GVATAYALNQ AQERGTLFIT PGTEVYEGMI
VGQHIRERDL EVNVCRRKHL TNIRSSTAEE GIRLETPRVL SLDDAIEYIS DDELVEVTPK
SIRLRKRLLT LTERQREQKR RETGVKS
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