Gene Rcas_0338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0338 
Symbol 
ID5537800 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp417185 
End bp420766 
Gene Length3582 bp 
Protein Length1193 aa 
Translation table11 
GC content63% 
IMG OID640892501 
Producttranscriptional regulator 
Protein accessionYP_001430488 
Protein GI156740359 
COG category[R] General function prediction only 
COG ID[COG3899] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.497277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAAAT CGCTCAGGAT TGAACTGTTC GGCACGCTCA CCGTCCTGGT CGATGGTCAT 
CCCGTGCCGG ACTCCGCCTG GCGTTCCCGG CAGGAGCGGC GTCTGCTCGC CATACTCGCC
GCAGCGCGGG GACGGCTTAT CGCTGCCGAC CGGCTGTATG AGTGGTTATG GCCCGGTTCA
GATCATGCCA GCGCAGCGGT AAACCTGCGC AGCGCCATCA GCAGTCTTCG TCGCCTTCTC
GAACCAGAAG CCGACCGCGC CTCACACCGC TACATTCTGA CCCGTTCCGG CGGGTATGCC
TGGAATATGG AGAGTGGCGC GTGGATTGAT GTTGATGCGT TTCTCTCGTT AACAGAACCG
ACCGGAACCG ACGATAGTGT TGCCGCAAAG CGCGAAGCGG AACGCCTGGA ACGCGCCGTT
GCGCTCTACC GCGGCGATTT TCTCGAAGAG GAGCAGGATC TTGCGTGGGT CATTATGGAG
CGTGAGCGTC TGCGCGCGCG CTATCTCGAT GCATTGCGAC GACTTGCGGA GATTAAACTC
GATCGCGGTG ATCCAACAGC GGCAATGGCG CTGGCCGGGC GCGGCATTGC CGTGGCTTCG
CTTGCCGAAC CGCTCTGGCG GATATTGATG CTGGCGCAGG CGCGCGCGGG CGACACGGCG
GGTGCGCTTC AGAGTTATGA ACGGTACCGG CATCTCCTGG ATCACGAACT GGGGGCCGTG
CCGTCCCCTC AGACACAGGC GCTCCACATG GCGATCCTGC GCGGCGATCT CGGAGTCGAA
CGGCGAATCG GCAGTCCTCC ATTGCAGGGA GATCACAACG AGCGGCTGCG CTCAACCGAC
GTGCGCAGTG CCGGCGGTCC TCTCCAGGCA ATACGTCTGC CACGGTCGGC ATCGACGCCA
ATTGTTGGGC GACAGGAGGA ACTGGCATTG CTCCGACGCT GGCTCGCCGA TCTCGATCAG
CGCACCGGCG GGATTGTCAC GATCGTTGGC GAAGCAGGAA TCGGGAAAAC GCGCCTGCTG
ACGGAAACGT TGCGCATTGC CGCCGACCGT GGCGCTCTGA CGCTCGAACT GCGCGCGACC
TCATTGGATC AGGGGTTGCC CTTTGCAGCG GTGAGTGAGG TGTTGCGTTC ACTGGTGCGC
AACGCGCCAG AACAGCGCCT GCGCCGGTTG CCGCAGTTTG CGCTGGCGCA GATTGCCGAT
CTCTTTCCGG CGCTGCGCGA ACGGTTGCCA GACCTGCCAG CGTTGCCGGA TGTCCCGCCG
GATGAGCGTC GCACTCGTCA GATCGAAGGC TTATGCGAAC TGGCGCTCGA CCTGGCGCAC
ACCCTGCCGC TGGTGATCGC GCTCGATGAT GCACAGTGGG CGGATGAAGC CACACTGGCG
ACCATTGGAC GTCTTGCCCG CCAGTCATCG CGCCGATCAT TACTGATCAT GCTGGCATAC
CGTGCTGACG AACTCAGTGA TAATCCGTCG CTCCACCGCC TGCTCCGCAC ACTTGGACGC
GATATGCTAT TGCGCCCGCT GGTGCTCAAC CGTCTTGACG CCGCCGCAGT GGCGGAACTT
CTCGCCACGC TTGCCGGAGT CGAAACCGGA CGGGTCGCAC GTCTGGCGCC TCAACTTGCG
ATCAGCACCG GCGGCAATCC TCTGGCGATT ATGGTGACCG TCCAGGCGCT GCTGGAGAGT
CGCGGCGCAG CGTCACTTGC TGCTTTGCTG CCCGATCTCG AAGCCGGTGC GCCATTCCCC
GATCCGACCG AAGCGCCGCA GATGCGTGAA CTGGTGCGCA CGCGCCTTGA CCGTCTGCCT
GCAACTGCGC GTAACCTGGC AGAACATCTG GCTTTGATCA ACCGCCCCGC GTCACTCGAC
ATGATTGAAC GACTTGGCGG TACCGACGCG CTCGAAGCCG CGCAAATCCT GCTCGAACGC
CAGATACTGG TTGAAGATGA CGATGCGCAC CTTGCGTTCA ACCACGATCT GGTGCGTTCG
ATCACGGCAG CAACGCTCTC GTCGCCGCGA CGGCGTCTGC TCCATCATCG GATCGGCGAA
GCGATGGCGG CGCTGGAAGG GCATCTGCCG GAACGCGCCG CCGAGATCGC CTATCACTTT
CGACAGGCGG GCCGTACCGC TGATCGTGAA ACGCTGCGGT ATGCAACTGA TGCTGGCGAC
CATGCGCGTC GCGCATTCGG CTATCGTGAT GCATTGCGCC ACTACGACGC CGCTCTTGAG
GCGGGCGAGC GCCTCGGCGA CGAAGCGCCG GTCGAGGTGA TGCAGCGCGC CTTCGCCGGA
CGGTTGCTGA CGTGCGAGAC GCTGCTGGAC TGGCATGGGC TGGAGGAAAC ATCGGCGCGC
TATGAGCGCT GGGCGATGCA GCGCAGTGTG ACGCCGCCAA CGCTCGTTGC GCCGCGTCGG
TTGGTGTTGC TGCGCGCGCT GATGGGCGAT CTGGCAGGCG CTGCCGCGAT CAGCGCGGCG
CATACGGCGC GCGCGCAAAA AGGCGGTTGT GTTGAACCGC TGCCTTCGAT TGCCGACATG
CTTCAGCGCA CGGCACTGAT CCTACAGCCT GATACGCTTT CTGTCGTCTC CGAGCGCTCG
CGTGGGGAAG CGCGCAAGCG TCGGATGGGG ATTGGCGATC GGCGCTCTTT AGGGGCGGAT
ATTGTTTCAC GTGAAACAGT TGAATCAGAA ATCCAGTCTG CCGATCTCCG TTCGATGCGT
GATGCTGATG CGGCATGGCA TGCGTTTCCA TCGTTCATGC TCGCTCATCC TGTTCCAGGT
AATCCGGCGG AAGAACTGCC TGAACTTCTC GGAGCGGACG AAGCGGCAGC GGCGTTGTTC
CAGATAGGAT GGGCAGCGCT TATGCAGGGA TTGCTGCGCA GCGCGCGCCC GTGCCTGATC
CGATCATACG CGCTGGCGGT CGAAACCGGT CAGGCGCCGG CAGCCGTTGT CTCGGCGCTG
CAACTGGCGC ACCTGAATGC GCTTACAGGC AAACCCGACG AAACGGCGAT CTGGCTGGAA
CGGAGTCTGG AGACTTCGGC ACGTGCATCC GAAGCTGCAT GGGCGTCGAT CTGGCCCCGC
ATCCATCAGG GTTTTCTCTG GCTCATCGAT GATCGCCTGG CGCAAGCGGA AGAGCGTTTT
GTCGATATGG CGGCGCGTCT TGCCGGTGCA CCGGCATTTC AGTCACACCG CGCCAGTATT
GCCGTCGGCA TGGGGATGAT CGCGCTGGCG CGCGGCGACC TGACAGGCGC GGACTCTTAT
TTTCACGAGG CGCTGCGCGC GTCGCAGCAG TTGTATGGTT TTATCTATGT GAGCGCGCAT
CATGGTCTGG CGCGTCTTGC GGCGTTGCGC AACGACTTGC CGCGCGCCCG TGACGTGTTG
TTGCACGCGC TGCGCTACAG CGCTCAGCGG GCGCTGCTGC CGGAGTATGT CCGTACCGTT
ATCGAGGTGG CGCGTATTGA GCGCGACTTT GGCGATCCTA TCCCCGTTCT TCCTTATTTG
CGCATTGCTG TCCGTCTTGC GCGTGACGCC GGACTTGCGC CGCTTGCATC AGCCGCCTCT
GCCTTGTCTA CCCGTCTTGA GGAGAGTCAC CGTGTCCCCT GA
 
Protein sequence
MEKSLRIELF GTLTVLVDGH PVPDSAWRSR QERRLLAILA AARGRLIAAD RLYEWLWPGS 
DHASAAVNLR SAISSLRRLL EPEADRASHR YILTRSGGYA WNMESGAWID VDAFLSLTEP
TGTDDSVAAK REAERLERAV ALYRGDFLEE EQDLAWVIME RERLRARYLD ALRRLAEIKL
DRGDPTAAMA LAGRGIAVAS LAEPLWRILM LAQARAGDTA GALQSYERYR HLLDHELGAV
PSPQTQALHM AILRGDLGVE RRIGSPPLQG DHNERLRSTD VRSAGGPLQA IRLPRSASTP
IVGRQEELAL LRRWLADLDQ RTGGIVTIVG EAGIGKTRLL TETLRIAADR GALTLELRAT
SLDQGLPFAA VSEVLRSLVR NAPEQRLRRL PQFALAQIAD LFPALRERLP DLPALPDVPP
DERRTRQIEG LCELALDLAH TLPLVIALDD AQWADEATLA TIGRLARQSS RRSLLIMLAY
RADELSDNPS LHRLLRTLGR DMLLRPLVLN RLDAAAVAEL LATLAGVETG RVARLAPQLA
ISTGGNPLAI MVTVQALLES RGAASLAALL PDLEAGAPFP DPTEAPQMRE LVRTRLDRLP
ATARNLAEHL ALINRPASLD MIERLGGTDA LEAAQILLER QILVEDDDAH LAFNHDLVRS
ITAATLSSPR RRLLHHRIGE AMAALEGHLP ERAAEIAYHF RQAGRTADRE TLRYATDAGD
HARRAFGYRD ALRHYDAALE AGERLGDEAP VEVMQRAFAG RLLTCETLLD WHGLEETSAR
YERWAMQRSV TPPTLVAPRR LVLLRALMGD LAGAAAISAA HTARAQKGGC VEPLPSIADM
LQRTALILQP DTLSVVSERS RGEARKRRMG IGDRRSLGAD IVSRETVESE IQSADLRSMR
DADAAWHAFP SFMLAHPVPG NPAEELPELL GADEAAAALF QIGWAALMQG LLRSARPCLI
RSYALAVETG QAPAAVVSAL QLAHLNALTG KPDETAIWLE RSLETSARAS EAAWASIWPR
IHQGFLWLID DRLAQAEERF VDMAARLAGA PAFQSHRASI AVGMGMIALA RGDLTGADSY
FHEALRASQQ LYGFIYVSAH HGLARLAALR NDLPRARDVL LHALRYSAQR ALLPEYVRTV
IEVARIERDF GDPIPVLPYL RIAVRLARDA GLAPLASAAS ALSTRLEESH RVP