Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0338 |
Symbol | |
ID | 5537800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 417185 |
End bp | 420766 |
Gene Length | 3582 bp |
Protein Length | 1193 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640892501 |
Product | transcriptional regulator |
Protein accession | YP_001430488 |
Protein GI | 156740359 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.497277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAAAT CGCTCAGGAT TGAACTGTTC GGCACGCTCA CCGTCCTGGT CGATGGTCAT CCCGTGCCGG ACTCCGCCTG GCGTTCCCGG CAGGAGCGGC GTCTGCTCGC CATACTCGCC GCAGCGCGGG GACGGCTTAT CGCTGCCGAC CGGCTGTATG AGTGGTTATG GCCCGGTTCA GATCATGCCA GCGCAGCGGT AAACCTGCGC AGCGCCATCA GCAGTCTTCG TCGCCTTCTC GAACCAGAAG CCGACCGCGC CTCACACCGC TACATTCTGA CCCGTTCCGG CGGGTATGCC TGGAATATGG AGAGTGGCGC GTGGATTGAT GTTGATGCGT TTCTCTCGTT AACAGAACCG ACCGGAACCG ACGATAGTGT TGCCGCAAAG CGCGAAGCGG AACGCCTGGA ACGCGCCGTT GCGCTCTACC GCGGCGATTT TCTCGAAGAG GAGCAGGATC TTGCGTGGGT CATTATGGAG CGTGAGCGTC TGCGCGCGCG CTATCTCGAT GCATTGCGAC GACTTGCGGA GATTAAACTC GATCGCGGTG ATCCAACAGC GGCAATGGCG CTGGCCGGGC GCGGCATTGC CGTGGCTTCG CTTGCCGAAC CGCTCTGGCG GATATTGATG CTGGCGCAGG CGCGCGCGGG CGACACGGCG GGTGCGCTTC AGAGTTATGA ACGGTACCGG CATCTCCTGG ATCACGAACT GGGGGCCGTG CCGTCCCCTC AGACACAGGC GCTCCACATG GCGATCCTGC GCGGCGATCT CGGAGTCGAA CGGCGAATCG GCAGTCCTCC ATTGCAGGGA GATCACAACG AGCGGCTGCG CTCAACCGAC GTGCGCAGTG CCGGCGGTCC TCTCCAGGCA ATACGTCTGC CACGGTCGGC ATCGACGCCA ATTGTTGGGC GACAGGAGGA ACTGGCATTG CTCCGACGCT GGCTCGCCGA TCTCGATCAG CGCACCGGCG GGATTGTCAC GATCGTTGGC GAAGCAGGAA TCGGGAAAAC GCGCCTGCTG ACGGAAACGT TGCGCATTGC CGCCGACCGT GGCGCTCTGA CGCTCGAACT GCGCGCGACC TCATTGGATC AGGGGTTGCC CTTTGCAGCG GTGAGTGAGG TGTTGCGTTC ACTGGTGCGC AACGCGCCAG AACAGCGCCT GCGCCGGTTG CCGCAGTTTG CGCTGGCGCA GATTGCCGAT CTCTTTCCGG CGCTGCGCGA ACGGTTGCCA GACCTGCCAG CGTTGCCGGA TGTCCCGCCG GATGAGCGTC GCACTCGTCA GATCGAAGGC TTATGCGAAC TGGCGCTCGA CCTGGCGCAC ACCCTGCCGC TGGTGATCGC GCTCGATGAT GCACAGTGGG CGGATGAAGC CACACTGGCG ACCATTGGAC GTCTTGCCCG CCAGTCATCG CGCCGATCAT TACTGATCAT GCTGGCATAC CGTGCTGACG AACTCAGTGA TAATCCGTCG CTCCACCGCC TGCTCCGCAC ACTTGGACGC GATATGCTAT TGCGCCCGCT GGTGCTCAAC CGTCTTGACG CCGCCGCAGT GGCGGAACTT CTCGCCACGC TTGCCGGAGT CGAAACCGGA CGGGTCGCAC GTCTGGCGCC TCAACTTGCG ATCAGCACCG GCGGCAATCC TCTGGCGATT ATGGTGACCG TCCAGGCGCT GCTGGAGAGT CGCGGCGCAG CGTCACTTGC TGCTTTGCTG CCCGATCTCG AAGCCGGTGC GCCATTCCCC GATCCGACCG AAGCGCCGCA GATGCGTGAA CTGGTGCGCA CGCGCCTTGA CCGTCTGCCT GCAACTGCGC GTAACCTGGC AGAACATCTG GCTTTGATCA ACCGCCCCGC GTCACTCGAC ATGATTGAAC GACTTGGCGG TACCGACGCG CTCGAAGCCG CGCAAATCCT GCTCGAACGC CAGATACTGG TTGAAGATGA CGATGCGCAC CTTGCGTTCA ACCACGATCT GGTGCGTTCG ATCACGGCAG CAACGCTCTC GTCGCCGCGA CGGCGTCTGC TCCATCATCG GATCGGCGAA GCGATGGCGG CGCTGGAAGG GCATCTGCCG GAACGCGCCG CCGAGATCGC CTATCACTTT CGACAGGCGG GCCGTACCGC TGATCGTGAA ACGCTGCGGT ATGCAACTGA TGCTGGCGAC CATGCGCGTC GCGCATTCGG CTATCGTGAT GCATTGCGCC ACTACGACGC CGCTCTTGAG GCGGGCGAGC GCCTCGGCGA CGAAGCGCCG GTCGAGGTGA TGCAGCGCGC CTTCGCCGGA CGGTTGCTGA CGTGCGAGAC GCTGCTGGAC TGGCATGGGC TGGAGGAAAC ATCGGCGCGC TATGAGCGCT GGGCGATGCA GCGCAGTGTG ACGCCGCCAA CGCTCGTTGC GCCGCGTCGG TTGGTGTTGC TGCGCGCGCT GATGGGCGAT CTGGCAGGCG CTGCCGCGAT CAGCGCGGCG CATACGGCGC GCGCGCAAAA AGGCGGTTGT GTTGAACCGC TGCCTTCGAT TGCCGACATG CTTCAGCGCA CGGCACTGAT CCTACAGCCT GATACGCTTT CTGTCGTCTC CGAGCGCTCG CGTGGGGAAG CGCGCAAGCG TCGGATGGGG ATTGGCGATC GGCGCTCTTT AGGGGCGGAT ATTGTTTCAC GTGAAACAGT TGAATCAGAA ATCCAGTCTG CCGATCTCCG TTCGATGCGT GATGCTGATG CGGCATGGCA TGCGTTTCCA TCGTTCATGC TCGCTCATCC TGTTCCAGGT AATCCGGCGG AAGAACTGCC TGAACTTCTC GGAGCGGACG AAGCGGCAGC GGCGTTGTTC CAGATAGGAT GGGCAGCGCT TATGCAGGGA TTGCTGCGCA GCGCGCGCCC GTGCCTGATC CGATCATACG CGCTGGCGGT CGAAACCGGT CAGGCGCCGG CAGCCGTTGT CTCGGCGCTG CAACTGGCGC ACCTGAATGC GCTTACAGGC AAACCCGACG AAACGGCGAT CTGGCTGGAA CGGAGTCTGG AGACTTCGGC ACGTGCATCC GAAGCTGCAT GGGCGTCGAT CTGGCCCCGC ATCCATCAGG GTTTTCTCTG GCTCATCGAT GATCGCCTGG CGCAAGCGGA AGAGCGTTTT GTCGATATGG CGGCGCGTCT TGCCGGTGCA CCGGCATTTC AGTCACACCG CGCCAGTATT GCCGTCGGCA TGGGGATGAT CGCGCTGGCG CGCGGCGACC TGACAGGCGC GGACTCTTAT TTTCACGAGG CGCTGCGCGC GTCGCAGCAG TTGTATGGTT TTATCTATGT GAGCGCGCAT CATGGTCTGG CGCGTCTTGC GGCGTTGCGC AACGACTTGC CGCGCGCCCG TGACGTGTTG TTGCACGCGC TGCGCTACAG CGCTCAGCGG GCGCTGCTGC CGGAGTATGT CCGTACCGTT ATCGAGGTGG CGCGTATTGA GCGCGACTTT GGCGATCCTA TCCCCGTTCT TCCTTATTTG CGCATTGCTG TCCGTCTTGC GCGTGACGCC GGACTTGCGC CGCTTGCATC AGCCGCCTCT GCCTTGTCTA CCCGTCTTGA GGAGAGTCAC CGTGTCCCCT GA
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Protein sequence | MEKSLRIELF GTLTVLVDGH PVPDSAWRSR QERRLLAILA AARGRLIAAD RLYEWLWPGS DHASAAVNLR SAISSLRRLL EPEADRASHR YILTRSGGYA WNMESGAWID VDAFLSLTEP TGTDDSVAAK REAERLERAV ALYRGDFLEE EQDLAWVIME RERLRARYLD ALRRLAEIKL DRGDPTAAMA LAGRGIAVAS LAEPLWRILM LAQARAGDTA GALQSYERYR HLLDHELGAV PSPQTQALHM AILRGDLGVE RRIGSPPLQG DHNERLRSTD VRSAGGPLQA IRLPRSASTP IVGRQEELAL LRRWLADLDQ RTGGIVTIVG EAGIGKTRLL TETLRIAADR GALTLELRAT SLDQGLPFAA VSEVLRSLVR NAPEQRLRRL PQFALAQIAD LFPALRERLP DLPALPDVPP DERRTRQIEG LCELALDLAH TLPLVIALDD AQWADEATLA TIGRLARQSS RRSLLIMLAY RADELSDNPS LHRLLRTLGR DMLLRPLVLN RLDAAAVAEL LATLAGVETG RVARLAPQLA ISTGGNPLAI MVTVQALLES RGAASLAALL PDLEAGAPFP DPTEAPQMRE LVRTRLDRLP ATARNLAEHL ALINRPASLD MIERLGGTDA LEAAQILLER QILVEDDDAH LAFNHDLVRS ITAATLSSPR RRLLHHRIGE AMAALEGHLP ERAAEIAYHF RQAGRTADRE TLRYATDAGD HARRAFGYRD ALRHYDAALE AGERLGDEAP VEVMQRAFAG RLLTCETLLD WHGLEETSAR YERWAMQRSV TPPTLVAPRR LVLLRALMGD LAGAAAISAA HTARAQKGGC VEPLPSIADM LQRTALILQP DTLSVVSERS RGEARKRRMG IGDRRSLGAD IVSRETVESE IQSADLRSMR DADAAWHAFP SFMLAHPVPG NPAEELPELL GADEAAAALF QIGWAALMQG LLRSARPCLI RSYALAVETG QAPAAVVSAL QLAHLNALTG KPDETAIWLE RSLETSARAS EAAWASIWPR IHQGFLWLID DRLAQAEERF VDMAARLAGA PAFQSHRASI AVGMGMIALA RGDLTGADSY FHEALRASQQ LYGFIYVSAH HGLARLAALR NDLPRARDVL LHALRYSAQR ALLPEYVRTV IEVARIERDF GDPIPVLPYL RIAVRLARDA GLAPLASAAS ALSTRLEESH RVP
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