Gene Rcas_0318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0318 
Symbol 
ID5537780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp391241 
End bp392392 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content60% 
IMG OID640892482 
ProductUBA/THIF-type NAD/FAD binding protein 
Protein accessionYP_001430469 
Protein GI156740340 
COG category[H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
[COG0607] Rhodanese-related sulfurtransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.139087 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACTGT CTTCTCTGTC GAATGAAGAG ATTCGCCGGT ATTCGCGGCA TTTGATTCTG 
CCTGAGTTTG GCATGGAAGG GCAACGCAAA CTCAAGCAGG GCAGCGTGCT CCTGATCGGA
ACCGGCGGGC TTGGGTCGCC GCTGGCGCTG TACCTTGCCG CTGCTGGCGT GGGACATATC
GGTCTGGTTG ATTTCGACAT CGTCGACGAA AGCAACCTGC AACGCCAGAT CATTCACGGC
ACATCCACGC TGGGCATTCG CAAGACCGAG TCGGCAAAGA TGCGCTTGCG CGATCTCAAT
CCGCACATCG ATATCGCCAC GTATGAGACG CAGATCACAT CCGAGAACGC CTTTGACTTG
ATGCGTCCCT ACGATGTCAT CGTCGATGGC ACCGACAACT TCCCGACGCG CTACCTGACG
AACGATGCCT GCGTCATGCT CGGCAAACCC AACGTCTACG GTTCGATCTT TCGCTTCGAG
GGGCAGGCGA CGGTCTTTTC GCCGAAGCAT GGCGGTCCGT GCTACCGTTG TCTCTACCCT
GAGCCGCCGC CGCCGGGTCT GGTGCCGAGT TGCGCCGAAG GGGGCGTGCT CGGCGTACTT
CCCGGCGTCA TTGGAACAAT CCAGGCGACC GAGGCGATTA AGCTGCTCAC CGGCATCGGC
GAGCCGCTGA TCGGGCGTTT GCTGCTCTAT GATGCCCTGG CAATGCGCTT CCGCGAACTG
AAATTGCGTC GCAACCCTGA TTGTCCGGTG TGTGGTGATC ACCCAACCGT CACGGAACTG
ATCGATTATC AGCAGTTCTG CGGCATTTCG CCGGAAGAAG CGCACCGCGA CGCAACCATC
GAGATCACGC CGGCCGAAGT CGCCGAATGG TTGCAGAGCG ATCATCCGCC CTTCCTGCTC
GATGTGCGCG AGGCAAATGA GTGGGAGATC TGCCATCTGC CGGGCGCCGT GCGTATTTCA
GTCAACGAAC TTGCTGAGCG GATGAACGAA CTCGACAGTG CGGTCGAAAT GGTCGTCTAC
TGTCGCAGCG GCGTGCGCAG CGCACGCGCG GTCGACCTGT TGCGCCAGGC CGGTTTCCGC
AAGGTGAAAA ACCTGGCCGG CGGCATCCTC CGCTGGGCGG ATGAGGTGGA CCCCGGCGTG
CCAAAGTACT GA
 
Protein sequence
MILSSLSNEE IRRYSRHLIL PEFGMEGQRK LKQGSVLLIG TGGLGSPLAL YLAAAGVGHI 
GLVDFDIVDE SNLQRQIIHG TSTLGIRKTE SAKMRLRDLN PHIDIATYET QITSENAFDL
MRPYDVIVDG TDNFPTRYLT NDACVMLGKP NVYGSIFRFE GQATVFSPKH GGPCYRCLYP
EPPPPGLVPS CAEGGVLGVL PGVIGTIQAT EAIKLLTGIG EPLIGRLLLY DALAMRFREL
KLRRNPDCPV CGDHPTVTEL IDYQQFCGIS PEEAHRDATI EITPAEVAEW LQSDHPPFLL
DVREANEWEI CHLPGAVRIS VNELAERMNE LDSAVEMVVY CRSGVRSARA VDLLRQAGFR
KVKNLAGGIL RWADEVDPGV PKY