Gene Rcas_0303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0303 
Symbol 
ID5537765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand+ 
Start bp379069 
End bp379698 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content62% 
IMG OID640892467 
Producttranscriptional regulator, TrmB 
Protein accessionYP_001430454 
Protein GI156740325 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.320797 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.117195 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGG CGCAGTATAC CGAAGACACG CCGGCAGGGA AGATTCTGAC CTACCTGCGA 
CGTCATGGCG AAGCGACGAT CAAAGACCTG GAAGAGTTGT TGGGTATCAG CACGACGGCG 
GTGCGCGAGC ATCTGGCGCA TCTGGAAGCG AAAGGTCTGC TGACGACGCG GCAGGCGCGT 
GGCGGTCCCG GTCGTCCAAG ACTGGTGTAC TCGCTCACAC CCCGCGCCGA AGACCTGTTT 
CCGAAGGAGT ACGATACACT GGTCACATTG CTGCTGCGCG AGATTGCGAG CCGCGAGGGG 
AAAGAGCGAC TTGACGCGCT GCTCGAGGCG GTCGGGAAAC GCCTGGCGGA AGAGTACCGT 
GGGCAGGTGG TCGGCGATGA TGTGGAAGAA CGCCTGGCAC ATCTGCGTGT CACGCTCGAA 
GCGCGCGGCA TTCCGGTGGA AGTGACGCCG GACGGCGCAT TGCAGGTGTT CGCCTGCCCG 
TACCACGACG TGGCGCAAGA GCATGCCGGC GTGTGCATCA TGGAGCGTCG TATGCTCGAG 
CAGGTGCTCG GCGAGCGGGT GGAGATTGAG GGCACCATTC GCGAAGGGCG TCGCAATTGT 
CATTTCCAGA TTACGCGGTC TTCGGAGTAG
 
Protein sequence
MTLAQYTEDT PAGKILTYLR RHGEATIKDL EELLGISTTA VREHLAHLEA KGLLTTRQAR 
GGPGRPRLVY SLTPRAEDLF PKEYDTLVTL LLREIASREG KERLDALLEA VGKRLAEEYR 
GQVVGDDVEE RLAHLRVTLE ARGIPVEVTP DGALQVFACP YHDVAQEHAG VCIMERRMLE 
QVLGERVEIE GTIREGRRNC HFQITRSSE