| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0284 |
|---|
| Symbol | |
|---|
| ID | 5537746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 350981 |
|---|
| End bp | 352756 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640892448 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001430435 |
|---|
| Protein GI | 156740306 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAG CAGAGCGCAT CCCGCTCCCA TCGAAGATTT CTCTGCAACG CCAGATGATC
GGCGGCGACC GTTTCTACAA TCTATCGCGC TGGGGCGTGA CTATCCTGCT CATCGGGATT
GTTCAACTGA TTGCCGGTGA GTCGCTCTGG TCCCCCACTG CTGCGCACAG CCCGATGATC
GTCGTGATGT GGGGATACGT CGTCTTCACT ACGCTGGCGA CGATTATGGT GTTTATTCCG
CAAATTGCGG CGTTCCTGCG GTTCAGTTTT GCCGTCGATA TTCTGGCATT GCTGCTGCTG
ACGCTCTTCA ACCCCGATCC GCGCGAGATT CTCTATCCGC TCTTCCTGCT ACCGCTCGTC
AATGCGGCAT TCCGCCTGAA TTCGTCGGCA AGTTTGCTAA CCGGGCTGAT CACCGCATTC
GCGTACATCG GAGCCTATCT GATCGCGCGC ATTGGTCCGG GCAACGGCTC GATTCCGTCC
GATCCACTCG GGTATGTGGG GCTGACGTTG CGCGCGCTGG CGCTCGTGTT CATTCCCTGG
ATTACGGGGG GGTTGGCGGA ACGCTGGAGC GCCAGCAACC GGTTGAGTGT GGCGCTGGCG
GAAGAGAAGG CGGCTGAGGC GTTGCGTGAG GCGAATGCCT ACCGCGATCA GACGCGCGCG
CTGTATGAGG CAGCGTATAC GCTGGCGACG ACCAACGATT ATCAGAACGT GCTCGAAGTG
ACGCTTGACG AAAGCCAGAA ACTGGCGCCG TATACGTGTG GGATGGTGCT CCTCTCCACC
GGGCAGACCA ATCAACTGTT CGTCGCTTCG TCGCGCGGGC TGGACCCCAA CGACCAGGAA
CGCATTGTAA CGATCGGACC CGGCGCCATC GGGCGAACGA TACGCGGTTC GGACCCGGTG
GTGCTGGATA ATTTCCGGGA TGACCCCGAA TTGATGGCGT TCACATCGCT GCACCGGCAT
CGCACCGCCT GCCTGTTGCC GCTCCGCTTC GGACTGAACA CATACGGGGT CATGGTTTTC
GCCAGCGACC ACGAACGCGC CTTTGGACAC GAAGAGGTCG AGAAACTCGC GGCGCTGGCA
TCCTATGCGC TGGTGGCGCT ACAGAACGCC CAACTGATCT ACGATCTGCA ACAGGAACGC
ACGAAACTCC TGTCGAAAGA GGAAGAGGTG CGCCATCAAC TGGCGCGCGA CCTGCACGAC
GGACCGGCAC AGGCGCTGGC GGCAATCACG ATGAACGTCG AGTTTATCAA GCGCCTGCTC
GAACGCGACC CGGCGCGCGT CCTGCCCGAA CTCGACAAAC TCGGACAACT CGCCAAGCGC
ACCACTCACG ATGTGCGCAC GATGCTGTTC GAATTGCGTC CGCTGGCGCT CGAAACGCAG
GGTCTCGATG TGACGCTACA ACAGTACTTT GAGCGCTTCC GCGACAATCC GACCAAAATC
ATTCTCGAAG CCGATACCAT TGATGCGCAA CTCGACACGA AAGTCGAGGG TACGCTGTTC
AACATCGTTC AGGAAGCAGT TAATAATGCG CTGAAACACG CAAAAGCGCA GCACATCTGG
GTGCGCCTGC GCCAGACGCC AACGACGCTC GAAACGATCA TTGAAGACGA CGGGCGCGGC
TTTGATGTCG AGAAGGTGCG TGCCAGCTAC GATCAGCGCG GTTCGTTCGG CTTGCTGAAC
ATCGAGGAAC GCGCCTCACT GATGGGTGGC GTCGCCGAAG TGACCTCCAC GCCAGGCAAA
GGCACGACGT GGAAGGTGAT TGTGCCACTC CAATGA
|
|---|
| Protein sequence | MDAAERIPLP SKISLQRQMI GGDRFYNLSR WGVTILLIGI VQLIAGESLW SPTAAHSPMI
VVMWGYVVFT TLATIMVFIP QIAAFLRFSF AVDILALLLL TLFNPDPREI LYPLFLLPLV
NAAFRLNSSA SLLTGLITAF AYIGAYLIAR IGPGNGSIPS DPLGYVGLTL RALALVFIPW
ITGGLAERWS ASNRLSVALA EEKAAEALRE ANAYRDQTRA LYEAAYTLAT TNDYQNVLEV
TLDESQKLAP YTCGMVLLST GQTNQLFVAS SRGLDPNDQE RIVTIGPGAI GRTIRGSDPV
VLDNFRDDPE LMAFTSLHRH RTACLLPLRF GLNTYGVMVF ASDHERAFGH EEVEKLAALA
SYALVALQNA QLIYDLQQER TKLLSKEEEV RHQLARDLHD GPAQALAAIT MNVEFIKRLL
ERDPARVLPE LDKLGQLAKR TTHDVRTMLF ELRPLALETQ GLDVTLQQYF ERFRDNPTKI
ILEADTIDAQ LDTKVEGTLF NIVQEAVNNA LKHAKAQHIW VRLRQTPTTL ETIIEDDGRG
FDVEKVRASY DQRGSFGLLN IEERASLMGG VAEVTSTPGK GTTWKVIVPL Q
|
|---|
| |