| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0282 |
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| Symbol | |
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| ID | 5537744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 348141 |
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| End bp | 349088 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640892446 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001430433 |
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| Protein GI | 156740304 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.418859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCATG GTGAACTGCT TCAACTGATC GTCGAGGCTG CCGATGAGGG TCATCGCCTG
GACCGGTACA TCGCCGGGAA AGTGCCCGAT CTCTCGCGCA CCTATGCTCG CCATTTGATC
GAAGACGCCC GCGTGCTCCT CAACAATCGC CAGGTGCGTC CAGCCTCCCC TGTGCGCGTC
GGAGATGTCG TCACCGTGCA ATTGCCGGAA CCACAGCCCG TCGGTCTGGT CGCCGAAGCG
CTCCCGCTCC AGATTGTGTA CGAGGACGAT GATGTCGTTG TGATCGACAA GCCTGCGGGC
ATAGTTGTGC ATCCCGCACC CGGTCACAAC CGCGGCACGC TTGTGAATGC GTTGATCGCG
CGCTATCCTG AGATGGCGAT CAGCGGCGAT CTGCGCCCCG GCATTGTGCA TCGGCTCGAC
CGCGACACGT CGGGGTTGCT GGTGGCGGCG CGCAACGACC GCGCGTTGCA TTCGTTGCAG
GCACAACAGC AGGCGCGTCG CATGTTAAAA ATCTATCTTG TGGTCGTCGA AGGACGGATG
AATGAGTCTG GGGGGGTGAT CGATGCACCC ATCGCGCGCC ATCCGACCGA CCGGGTGCGC
ATGGCGGTGA TGGCCGGCGG AAGACCGGCG CGCACCCACT GGCGCGTCCT GGAAGAACTG
GGGGAGTATG CGCTGATCGA GGCGCGTCTG GAGACGGGAC GAACCCATCA GATACGAGTG
CATTTCGCCT CGCGCAATCG CCCCGTGCTC GCCGATCCGC TCTACGGACC GAAGCGTCCG
CGCGCAACCT TTGGATTGAC GCGCCAGTTT CTCCATGCGC ATCGCCTGGG GTTTGCGCTG
CCATCGAGCG GCGCATGGGT CGAGTTCACC TCGCCGCTGC CGGACGATCT GGCAGCAGCG
CTCGCGCGAT TGCGGCAGCG CGCCAACAGC GCCATCAGGC GCACGTGA
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| Protein sequence | MVHGELLQLI VEAADEGHRL DRYIAGKVPD LSRTYARHLI EDARVLLNNR QVRPASPVRV
GDVVTVQLPE PQPVGLVAEA LPLQIVYEDD DVVVIDKPAG IVVHPAPGHN RGTLVNALIA
RYPEMAISGD LRPGIVHRLD RDTSGLLVAA RNDRALHSLQ AQQQARRMLK IYLVVVEGRM
NESGGVIDAP IARHPTDRVR MAVMAGGRPA RTHWRVLEEL GEYALIEARL ETGRTHQIRV
HFASRNRPVL ADPLYGPKRP RATFGLTRQF LHAHRLGFAL PSSGAWVEFT SPLPDDLAAA
LARLRQRANS AIRRT
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