| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0268 |
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| Symbol | |
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| ID | 5537730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 334542 |
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| End bp | 336305 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640892432 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001430419 |
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| Protein GI | 156740290 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0795166 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTTCTG TTCCACAGGC AAAACCTGGT GTACGGTTTC CCCGGCCTTC GCTGCCGGTC
ATTATCGCGG CAGTATTAAT AGTTGCTGTC GTCGCCACTC TGGTTGTGCC ACGGCTGGCG
GGCAGCGGCG CCGATCCGCT TCGGGGTGGC ACGCCGGTCA CCATTACCCG TGAAACGCTC
ATTGCCGGCA TCAGCGCCAC CGGACGCATC GAACCGCGCC AGGAAGCGGC GCTTGGTTTT
ACCCTCCCCG GTCGCGTCGC CGACATCCTG GTCGCCGAAG GCGATCTGGT TCAGGCCGGT
GCGCCGCTGA TCCGGCTCGA CAGCCGCGAA GCCGAGGCGC AGATAGCGTC GGCGCGCGCG
GCGCTGGCGC AAGCAGAAGC CGATCTGCGG CAGTTGCAGG AGGGCGCAAC GCCGGAAGAA
ATCGCACAGG CACAGGCGCA GGTCGAATCT GCACGGGGTG CGCTGGCGCA AACCGCTGGC
AGTGTTACAA ACGCCGACAT CGCCGCAGCC CGCGCCCGTG TCGAGGAGGC GCGCGCCCGC
CTGAGCGCCC TGCAAGGGGC GCCGAACAAC GATGAATTGA CGGCAGCGCG CGCGGCGCTC
ACCGAAGCGC AGGCGGCGCT TGATCGGCAG CGCAGCGCTC TTGCAACCGC CAAGATCGAT
GCCGAACGCC AGGTGTTCGA GCGCGCCAAT CGTTTGCGCG ATGCGCAGAC TGCCTTCGCC
GCCGCGCGCG ACAATCTGGC GCGGGTCGAG GCGGACGGCA AGGACCCGTT GACCGGCGCG
CCACTCACCG ATGCAGGCAA GCGCGCCTAT GCCGATGCGT TCGCGCAGGC GGAGCGCGCT
ATGCAAGATG CGGAACGGGC GCTCAATCAG GCGCGTATTG CCCACGAAAC GGCGCGCCAG
AACGAAATCA CCGGACTGGC GGAGGCTGAG GCGCGCGTCG CAACCGCACA GGCAAACCTC
GATGCCCTGC TTACCCCCAA CCCTGATCGC ATTGCTGCTG CGCGCGCGGC GCTGGCACAG
GCGGAAGCCG ACCTTGCCCG CCTGCTCGGC GAGCAGCGTC AGGGTGCGCT GGCAGCGCAA
CAGGCGAACC TTGCGGCTGC CGAAGCCAAC CTGGCGCGCC TGACTGCCGA TCCGCGCGCA
ACCGATCTGG CGCGCGCACA GGCGCGGGTG GCGCAGGCGC AGGCACAGCT CGACCTGGCG
CAGATCCGGC TTGATGATAC AACCCTGAAA GCGCCCTTCA CCGGCGTGGT CGCGCGCATC
ACCGTGGCCC CTGGCGAGCA AGCCGGTCAG AATCCGGTGT TGACGCTGAT CGACGTAAGC
CGTTTCAACG TTACTGTGAC GGTCGATGAA GTAGACGTAG CGCGCGTTGC GCCCGGTCAG
GAAGTCGAAG TCCTGATCGA TGCCCTTGGT CCGCCGCCGC TGACCGGCGT GGTGCAGCGC
ATCGCACCAC AGGCGACCAA TGAGCGCAAT GTCACTGCCT ATGAGGTGGA ACTCGAAGTG
ACGCCCGGCG AACGGCCAGT GCGCTCGGGT ATGACCGCAA GCGCCACGAT TATCACCGCG
AAGCGCGAAA ACGCAATCAG CGTTCCGGTT CAGGCGATCC GTGAAGAGAA TGGCGTGACC
GTCGTGGATG TGATTGTCAC CAACAACGGG CGCACAACTC TGGTTGCGCA GCCGGTCGAG
GTTGGCATTC GCGCTGGCGA CCGGGTCGAA ATTGTGAGCG GATTGCAGGA AGGGCAGCAG
GTGCTGTTGC CCGGCGCTCG ATAA
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| Protein sequence | MTSVPQAKPG VRFPRPSLPV IIAAVLIVAV VATLVVPRLA GSGADPLRGG TPVTITRETL
IAGISATGRI EPRQEAALGF TLPGRVADIL VAEGDLVQAG APLIRLDSRE AEAQIASARA
ALAQAEADLR QLQEGATPEE IAQAQAQVES ARGALAQTAG SVTNADIAAA RARVEEARAR
LSALQGAPNN DELTAARAAL TEAQAALDRQ RSALATAKID AERQVFERAN RLRDAQTAFA
AARDNLARVE ADGKDPLTGA PLTDAGKRAY ADAFAQAERA MQDAERALNQ ARIAHETARQ
NEITGLAEAE ARVATAQANL DALLTPNPDR IAAARAALAQ AEADLARLLG EQRQGALAAQ
QANLAAAEAN LARLTADPRA TDLARAQARV AQAQAQLDLA QIRLDDTTLK APFTGVVARI
TVAPGEQAGQ NPVLTLIDVS RFNVTVTVDE VDVARVAPGQ EVEVLIDALG PPPLTGVVQR
IAPQATNERN VTAYEVELEV TPGERPVRSG MTASATIITA KRENAISVPV QAIREENGVT
VVDVIVTNNG RTTLVAQPVE VGIRAGDRVE IVSGLQEGQQ VLLPGAR
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