| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0265 |
|---|
| Symbol | |
|---|
| ID | 5537727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 330058 |
|---|
| End bp | 332067 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640892429 |
|---|
| Product | TAP domain-containing protein |
|---|
| Protein accession | YP_001430416 |
|---|
| Protein GI | 156740287 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0441544 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0338675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTGC GGTTTGCTCT CTTGATCATC GCGCTCTTCT TGAGCGCGTG TGCGGTTCCG
TCGGCATCGA ATCCGACGCC AACCCTGGCG CCGGGCGCCG AAGCATTGCT CGGCGCGCCG
ACGACAACGC CGGTTCCGGC GCCGACCGCG GCGCCGGGGT CTACGGTCGC GCCAACGGCG
ACGGCGGTGC GGACGGTTGC ACGCTATGAA ACGGCAAATT GCGAATTTCC GCCGCCAGGC
GGTGTCTCGG TCGAGTGCGG TTGGCTGACA GTCCCGGAGG ATCGCGCGAA ACCCGATAAT
GGCAGAGAAG TGCGCCTCCA CGTCGCCATT TTTCGCAGCA CCCGCCCCGA CCCGCCCCCC
GATCCCATCG TCTACCTCGA AGGGGGTCCT GGCGTCGATG CGCTGGAGCG CCTGCCATTA
GTGTTCGATC TCTGGTTTCG ACCGTTCCTT GCCAATCGCG ACTTTATCCT GTACGACCCG
CGCGGCGCCG GTTATTCGAC TCCGTCGCTG GCGTGCCCTG AGCTGACGAA ACTCAGTTTT
GATATGCTGC CGATGGATGT TCGCGCTGCT GAAAGTTCGC GTCTCTGGGG CGAAGCGGCG
CTCAAATGCC GCGAACGCCT GGTTGCGGAA GGCATTGATC TGGCGCAGTA CAATACGCTC
ACCGGCGCCG CCGATCTGGA GGACCTGCGC CTGGCGCTCG GCTATGAACA GTGGAACCTG
ATCGGCAGTT CGTATGGCAC GCGCCTGGCG CTCACCGCCA TGCGCGAGTA TCCGCAGGGC
ATTCGGAGCG TGGTGCTCGA CTCGACGCGC CCGCCGCAGA TCAATGAGTC GCAGACGCCG
GCCGATGCTG AGCGCGCCTT TCAGACGCTG TTTCGCGGTT GCGCCGCCGA CCCGGATTGC
AATGCGGCGT ACCCCGACCT CGAGCGGGTG TTCTATGACC TGGTAGAGAA ACTCAATACG
CAACCGGTGA CGTTGCCCGG TGTTGATCCG TTTACCGGAC GCACCTACGA GGTGTTGATC
AACGGCGATA CACTGATCAG CACATTGTTC CAGGCGATGT ATTCGACGGA AATCATTCCG
CTGCTGCCGC GCGCGATCTA TGGTGCGGCG CAGAAGAATG AGTTCAGTCT GTGGGTGCGT
CTGATCATGA ACAATGTCTC GCAGAGCGAC TATTTCAGTT ATGGAGTGAT GTATTCCTCA
CGCTGCTATG ATGAGATTCT CTTCGAGACG CGCGAGGCGA TGGCAAAGGC GGATGAACCC
TTTCCGCATC AGCAGGACGT GTTCGATATG ACGGCGTTCT GGGACATCTG CAACGCCTGG
GGTGTCGGTG TGGCGCCGCC AATCGAAAAT CAGCCGGTGC GCAGCGCTAT TCCTGCGCTT
ATCCTCGCCG GAACCTACGA CCCGGCGACG CCGCCGGATG ATGGCAAAGA AGCAGTGGCG
ACGCTGCGCA ACGGTTTCTT CTTCGAGTTC CCATCATCGG GTCACGGCGT TCTTCTCGAT
GGCGGTTGCC CGTTAAGCAT GGCGCTGGCG TTTCTCGATA ATCCGCAGCG CCAACCGGAC
GCGGCGTGTC TGGCGCAGCT CGGCGGACCG GCGTTCGATG TCGAAGGTGC GGCGGTGCGC
ATGATCCCGT TCCGCGATAG CGATGCGGGT ATTGCCGGCG TCACGCCGCA GGGATGGACC
AATTTCGGGC AGGGCGTGTA TGGCCGTCCG TCAGGTGATG TCGCCATCGT TCAGATGCGG
ACGCCGCTTT CGGCGCTCGA AATGCTGGCG AGATTAGACC AGCAGTTCGA TCTGGATAGC
AAGCCTGAAT CGGCGGGTGA GTACCGCAGC GAACGCTATG CCTGGCAACT CTACACCGCA
ACGATCCGTG GACAACCGAC CGACATTGCG CTGACAGAGG ACGGCGGTCG TGCGTTGCTG
GTGCTGATGA TCAGCGACCC GGGCAATCGC GATGAGATGT ATGAGCAGGT GTTTCTGCCG
GTGCTCGATG CGCTGCGGGT GATTTCGTAG
|
|---|
| Protein sequence | MHLRFALLII ALFLSACAVP SASNPTPTLA PGAEALLGAP TTTPVPAPTA APGSTVAPTA
TAVRTVARYE TANCEFPPPG GVSVECGWLT VPEDRAKPDN GREVRLHVAI FRSTRPDPPP
DPIVYLEGGP GVDALERLPL VFDLWFRPFL ANRDFILYDP RGAGYSTPSL ACPELTKLSF
DMLPMDVRAA ESSRLWGEAA LKCRERLVAE GIDLAQYNTL TGAADLEDLR LALGYEQWNL
IGSSYGTRLA LTAMREYPQG IRSVVLDSTR PPQINESQTP ADAERAFQTL FRGCAADPDC
NAAYPDLERV FYDLVEKLNT QPVTLPGVDP FTGRTYEVLI NGDTLISTLF QAMYSTEIIP
LLPRAIYGAA QKNEFSLWVR LIMNNVSQSD YFSYGVMYSS RCYDEILFET REAMAKADEP
FPHQQDVFDM TAFWDICNAW GVGVAPPIEN QPVRSAIPAL ILAGTYDPAT PPDDGKEAVA
TLRNGFFFEF PSSGHGVLLD GGCPLSMALA FLDNPQRQPD AACLAQLGGP AFDVEGAAVR
MIPFRDSDAG IAGVTPQGWT NFGQGVYGRP SGDVAIVQMR TPLSALEMLA RLDQQFDLDS
KPESAGEYRS ERYAWQLYTA TIRGQPTDIA LTEDGGRALL VLMISDPGNR DEMYEQVFLP
VLDALRVIS
|
|---|
| |