| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0247 |
|---|
| Symbol | |
|---|
| ID | 5537709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 303969 |
|---|
| End bp | 305192 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640892411 |
|---|
| Product | response regulator receiver sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001430398 |
|---|
| Protein GI | 156740269 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.982907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.433647 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACC AGACACGCAT CATGGTCGTC GAAGACGATC CAACAATCGC CGGACTGATC
GAATTTGTGC TTCGAGGGGC CGGTTACCGG ACATTGCTTA CGGCCACCGC CACCGAAGCG
CTCGCCTGTA TCGAAACCGG CGACATCGAC CTGGTGATTC TGGATTGGAT GCTGCCGGAT
ATTCCGGGGG TTCAGATTTG CCTGGCTTTG AAGGAGCGTT CTGGCCGAGG CTTTTTGCCG
ATACTCATGC TCACCGCCAA AGGCGAAGTG TCAGACCGGA TCACAGCGCT CGACTCGGGC
GCCGATGATT ATTTGGCCAA GCCGTTTTAT ATCGAGGAAC TGCTGGCGCG GGTTCGAGCG
CTGCTCCGCA TCCGCGCCGC CGAAAGCGAA CGCGATGCGG CGATGGCGGC GCTCGCAGCC
CAAAATGACG CGCTGCGAGC CGCAAACGAC CAGTTACGCG CCATGCAGGC GCAACTGGTC
CAGAGTTCGA AGCTTGCCGC CCTGGGAGAA ATTGTGGCCG GCGTGGCGCA CGAATTGAAC
AATCCCCTCG CCATCATTCT GGGCAATGCT GAACTCCTTT CGCCGCAGCG CACTCCCGAC
GATCAGCGAT CCGTCGAACA GATTATCGAA AGCGCCAAAC GCGCCCGTCG TGTGGTGCAG
AGCCTGGCAA CCTTCGCCCG CCGCGGTCCG ATCATCAAAG AATGGACGGC GCCAACCGAT
CTGGTCGAAC GAGTGATCGA CCTCAAACGC GCAGCGCTTC ACGCTGCCGG AATCGCTCTT
GAAGTCGTCT GCCAGCCCGA TTTGCCGATG CTGTGGATCG ATGTGCCGCA AATGCAACAG
GCGCTGCTCA ATCTGCTGAT CAACGCTGAA CAGGCATTGT CCGGCGCTCC TGCCCCCTGG
ATGCGGCTCA GCGTCTCGCG AGGTCCTGCC GAACCGCCGC CACTGCTGCC GGCGCGCGCA
GTCGAGAATC ACGGTTCATT CGTGCGCTTT GATGTGGCGG ATAATGGTCC TGGCATCCCG
GCGCATATCA TTGAGCGACT GTTCGAGCCA TTCGTCACCA CCCGTCCGCC GGGCAAAGGG
TCGGGATTGG GACTTGCCAT CGCATATGGC ATTGTCACTC AACACAGTGG TCAGGTGCTC
GTCGCCAGTC AACCGAATCA GGGAACAACC GTGCGCATTG CATTGCCGGT CGATCCACCA
GAAGGCATGA CCTGGCAGGA GTAA
|
|---|
| Protein sequence | MPDQTRIMVV EDDPTIAGLI EFVLRGAGYR TLLTATATEA LACIETGDID LVILDWMLPD
IPGVQICLAL KERSGRGFLP ILMLTAKGEV SDRITALDSG ADDYLAKPFY IEELLARVRA
LLRIRAAESE RDAAMAALAA QNDALRAAND QLRAMQAQLV QSSKLAALGE IVAGVAHELN
NPLAIILGNA ELLSPQRTPD DQRSVEQIIE SAKRARRVVQ SLATFARRGP IIKEWTAPTD
LVERVIDLKR AALHAAGIAL EVVCQPDLPM LWIDVPQMQQ ALLNLLINAE QALSGAPAPW
MRLSVSRGPA EPPPLLPARA VENHGSFVRF DVADNGPGIP AHIIERLFEP FVTTRPPGKG
SGLGLAIAYG IVTQHSGQVL VASQPNQGTT VRIALPVDPP EGMTWQE
|
|---|
| |