| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0245 |
|---|
| Symbol | |
|---|
| ID | 5537707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 300654 |
|---|
| End bp | 303134 |
|---|
| Gene Length | 2481 bp |
|---|
| Protein Length | 826 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640892409 |
|---|
| Product | transglutaminase domain-containing protein |
|---|
| Protein accession | YP_001430396 |
|---|
| Protein GI | 156740267 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.894287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTT CTGTTACAAC TATTCCAAAC GAGACTCCAT CCCATTCCTG GTTTTCCCGA
CTCGAATTGG GGGCGCTTGC GTTGCCGTTT CTGCTGGCAG TCGCCATAAC GTGGAGCGTG
GCGCGGAGTC TGGAGGTTGC AAACTGGGCG GATGGGGTCA CTATGCTGAC CGGCATCGCA
CTGGCAGCCC TTTTGGTCGG CACGCTCTTT GCGCGGATCG CCTGGTTGCA TCCCTGGCTG
GCGCATCCGC TAGCGTTGCT GCCTGGAATG GTGTTCGTCA TCGAGCAGAT CAGCCCAATC
GTCCGCGCAC AAGCGACGGC TGAGTTTGGC GCGGCAAAGG CGCAGCGCCT GGACACCTGG
GGCGATGTCG CCGTAGACGT GGCGCTGCGT GCGCTCATCT GGCTGCGCAC ACTCCAGGCA
GGCGGGCGCG GTGAGGATAT TGTCCTCTTT GTCCTGATCC TGGCACTGAT CATCTGGGGA
ATGGGGTATG TGACCGGATG GCTCATCTTT CGCCATCAGC GCGCCTGGAT TGCCGTTGCG
TTGCAGGCAA GCATTATTCT GATCAATTAC GCCTATGCCT GGCCCAAGCC CACCGGATTG
TTCTTTGTTT TTTTGATCGC AGCGCTGTTG CTGATCGCCT ACCAGCATAT CGACCGTCAT
CAGCGCTTCT GGCGATCCAC GCGCGTCGAG TTCCCCGACT TTCTGCCGGC GCGCGTTCTG
CTGGCGTCGT TTCTGATCCT CCTGTTTCTC CTGATTGCCA CTGCATTTCT TCCGAATCAG
CCGGACAACG AATATCTGGC GCGTCTCTGG CGCACCATTC GCGCGCCGAT CACGGCGCTG
CGCGAGGAGT GGCAGGAAGC GTTCAGTACG ATCAATGCGC CGCCGGGATC GACCGGCGCG
TTTCTGACCC GTAATGCGCG GGTTGGCGGT CCCCGTCAGT TGGGCACGGC ACTGGTGATG
ACCGTGCGAT CTGCTGAGTA CAGTTACTGG CGCGCTGCGG CGTTCGATCG CTATACCGGT
CGCATGTGGC AGAACATGGT CGGTGAGCGC GCGCGCGCGG CGCTGGGAGT TGCGACGGCG
GAAGCGGCAC GGACGCCGCT TCCCCCCGGC GATCGGCTTG AACAGCCTGA ACTGCGTGGC
CGCACTCTGG TGACGACAAC AATCGAACTG GCGCAGACGC GCACCGATGG GTTGGTGATG
GTTGGTGGCG CGCTGGCGTC CACCAGTCTG CCGGTGCTGA TCCAGCATGG GTACCTGTCA
ATATCCGGCG AAGTGTTGCC GAACTTTACC GAAACCGCCA CGGTCGTCAC CGATGCGCCG
CTCGAGGCGA CGCAGGTGTA TACGGTCGCC ACGTACCTTT CCACCGTCGA TGAGCGGAGC
CTGCGCGAAA GCGGAACCAC ATACCCGGAA TGGGTGCGTG TGGCGTACCT CCAGCTGCCC
GACACACTGC CGCTGCGGGT GCGCGAACTG GCGGCTTCCA TCGTTCGTGA CGCTGGCGCG
GTGACGCCCT ACGATAAGGC GCTGGCAATC CAGGCGTATC TGCGCGCGCT GCCGTACAAC
GATCAGCGCC CGGTCCCGCC AGAAGATCGT GATTGGGTCG ATTGGTTCCT CTTCGATGCG
CCGGGGGGTT ACTGCGACGA TTTCACATCA GCAATGGTGG TGTTGCTGCG CGCCGAGGGC
GTTCCGGCGC GCTGGGTGCA GGGGTATGCC GGTGGCGAAC TCGACCCGGA CCGGCGAGTG
TATCTGGTGC GCGAGAATGT CGCCCATAGC TGGCCCGAAG TCTACTTCCC CGGGTATGGC
TGGCAACGCT TCGAGCCGAC GCCGGCGCCC TACGCCAGTG TGCCGGTGCG TCCGGCGTTC
CCGCCGGCTG ATGAAGCAGA GCGACCGGGA GTAACGAGCG GGTTGGGGAG CGCACTGAGC
GACCCGGAAG CCATGCTACG CGAGATGATC GAGCGCAACA CTGGTCCTGC GATTGGCGAC
GAGAGCGCGC TACAACGCGA GATCGAAGCG CGCCGCGCGC AGGAACGGTT GCGCCTGACG
GCAATCGTTG GCGGGACGCT AACGCTTATC CTGGCGCTGG TCGGCGTTTT GCTGCTCTGG
TTGCGCTGGG ATGTGCGCGG CCTTTCACCT GCCGCCGCCG CCTATGCGCG CCTGACGCGC
CTGGCGGGAT GGGCGGGGAT CACTGCACCG TCTGATGCGA CTCCGTATGA ATATGCGGCG
CTGATCCGGG AACGTATTCC TCACCAGGCA TATGTCATTG ATCGCATCGT TGGCGATTTT
GTCGCCGAGC GGTACCATTT TGCCCACAAA GCGTCCGCCC CATTGCCGGC TGAAGACTGG
CGCGCGCTGC GACGCGCGTT GCTGGCTCTG CTCATCGGGC GAGTCGGCGC AGCGATCCGC
CCTTCGGCAA TAAGTGCGCC ATCGCGGACT CGACGCCGGA TGCCGCCTGC GCAGCAGCGC
TCCTTGCGTC GCCTTCAGTA A
|
|---|
| Protein sequence | MSSSVTTIPN ETPSHSWFSR LELGALALPF LLAVAITWSV ARSLEVANWA DGVTMLTGIA
LAALLVGTLF ARIAWLHPWL AHPLALLPGM VFVIEQISPI VRAQATAEFG AAKAQRLDTW
GDVAVDVALR ALIWLRTLQA GGRGEDIVLF VLILALIIWG MGYVTGWLIF RHQRAWIAVA
LQASIILINY AYAWPKPTGL FFVFLIAALL LIAYQHIDRH QRFWRSTRVE FPDFLPARVL
LASFLILLFL LIATAFLPNQ PDNEYLARLW RTIRAPITAL REEWQEAFST INAPPGSTGA
FLTRNARVGG PRQLGTALVM TVRSAEYSYW RAAAFDRYTG RMWQNMVGER ARAALGVATA
EAARTPLPPG DRLEQPELRG RTLVTTTIEL AQTRTDGLVM VGGALASTSL PVLIQHGYLS
ISGEVLPNFT ETATVVTDAP LEATQVYTVA TYLSTVDERS LRESGTTYPE WVRVAYLQLP
DTLPLRVREL AASIVRDAGA VTPYDKALAI QAYLRALPYN DQRPVPPEDR DWVDWFLFDA
PGGYCDDFTS AMVVLLRAEG VPARWVQGYA GGELDPDRRV YLVRENVAHS WPEVYFPGYG
WQRFEPTPAP YASVPVRPAF PPADEAERPG VTSGLGSALS DPEAMLREMI ERNTGPAIGD
ESALQREIEA RRAQERLRLT AIVGGTLTLI LALVGVLLLW LRWDVRGLSP AAAAYARLTR
LAGWAGITAP SDATPYEYAA LIRERIPHQA YVIDRIVGDF VAERYHFAHK ASAPLPAEDW
RALRRALLAL LIGRVGAAIR PSAISAPSRT RRRMPPAQQR SLRRLQ
|
|---|
| |