| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0203 |
|---|
| Symbol | |
|---|
| ID | 5537664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 249681 |
|---|
| End bp | 250685 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640892366 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001430354 |
|---|
| Protein GI | 156740225 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.387989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGAA CAAACGACTA TACCCATGCG TATAGCGGCG CGCGCGTGCT CATTACAGGC
GGAATGGGGT TCATCGGTTC GAATCTGGCG CATCGCCTGG TGGAACTCGA TGCGCAGGTG
ACTCTGGTCG ACTCACTCAT CCCGATCTAC GGCGGCAATC AGCGCAACAT CGCCGGCATC
GAGCATCGGG TGCGCGTCAA CATCGCCGAT GTGCGCGACG AGTATTCGAT GAACTATCTG
GTGCAAGGGC AGGATTACCT CTTCAATCTT GCCGGTCAGA CGTCGCACCT GGACTCGATG
ACCGACCCCT ATACCGATCT TGAGATCAAC TGCCGCGCGC AGTTGTCGAT CCTCGAAGCC
TGTCGCAAGC ACAATCCCAA CCTGAAACTG GTGTACGCTT CGACGCGCCA GATCTATGGC
AAGCCGGATT ATCTGCCGGT CGATGAGCGC CACCTGCTCC ATCCGGTCGA TGTCAATGGC
GTCAACAAAA TGGCCGGCGA GTGGTACCAT ATTCTCTACA ATAACGTCTA TAGCATTCGC
GCATGCGCCC TGCGCCTGAC GAACACCTAT GGTCCGCGCA TGCGCGTCAA AGATGCGCGA
CAAACGTTTC TCGGCATCTG GATCAAGCGC CTGATTGACG AAGAGCCGAT CCAGGTCTTC
GGCGACGGGT CGCAGATCCG CGACTTCAAC TACGTTGATG ATGTGGTCGA AGCGATGCTG
CTGGCAGGCG CATCGCCTGC GGCGGATGGC GGCATCTTCA ATCTGGGCAG CGACGAAACG
ATCAACCTGC GCGACCTGGC GGCATTGCTG GTCGAAATTA ATGGCGGCGG CAGTTTTGAA
ATTGTGCCTT TCCCACCAGA CCGCAAAGTC ATCGACATCG GCGATTATTA CGCCGATTAC
CGCATGATCC AGGGGCGGCT CGGCTGGCGC CCCAAAGTGT CGTTGCGCGA GGGATTGCGC
CGTACTCTCG AGTTCTATCG GCGTGAGCGC GAGTATTACT GGTAG
|
|---|
| Protein sequence | MPGTNDYTHA YSGARVLITG GMGFIGSNLA HRLVELDAQV TLVDSLIPIY GGNQRNIAGI
EHRVRVNIAD VRDEYSMNYL VQGQDYLFNL AGQTSHLDSM TDPYTDLEIN CRAQLSILEA
CRKHNPNLKL VYASTRQIYG KPDYLPVDER HLLHPVDVNG VNKMAGEWYH ILYNNVYSIR
ACALRLTNTY GPRMRVKDAR QTFLGIWIKR LIDEEPIQVF GDGSQIRDFN YVDDVVEAML
LAGASPAADG GIFNLGSDET INLRDLAALL VEINGGGSFE IVPFPPDRKV IDIGDYYADY
RMIQGRLGWR PKVSLREGLR RTLEFYRRER EYYW
|
|---|
| |