Gene Rcas_0105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0105 
Symbol 
ID5537564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp125516 
End bp126634 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content58% 
IMG OID640892269 
Productalpha/beta hydrolase fold 
Protein accessionYP_001430259 
Protein GI156740130 
COG category[I] Lipid transport and metabolism 
COG ID[COG3243] Poly(3-hydroxyalkanoate) synthetase 
TIGRFAM ID[TIGR01836] poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.729703 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACGT CGCCTGAGAC GACGCTCTTT CCCGTAGATC CGGCGACAGT GGCGAAGAAC 
CTGTACGCCG AAGTTGAACG TTTGGGGAAA GCCTATGAAA TGGGCGTCAA GATCGCCACG
GGAAAACAAC GGGCAAAGGT GGCGCAGACG CCAAAAGAGG CGATCTGGAC GCTCAATAAG
ACCACTCTGT ATCATTACTA CCCGCAGGCG CCGGCGGAGA AGCGCAAACG GGTGCCGTTG
CTGCTCGTCT TTGCGTTGAT CAATAAGCCC TACATCTTCG ACCTGCGCCC AGGCAACAGC
TTCGTCGAAT ACATGGTTCA GCAGGGGTAC GACGTCTACC TGGTCGATTG GGGCGCCCCC
GGTCCAGAAG ATGCGCACCT GACGTTCGAT GATTATGCGC TCGAGTATCT GCCGCGTGCG
GTGCGCCGCA TGCAGATGCA CAGCGGGCAG CGCGATTTCA GTATGCTCGG TTGGTGCATC
GGTGCAACGC TTGCAGCGAT CTATGCGGCA ATGCGCCCGG ACGACGGTCT GCGCAATCTG
ATCCTGCTGA CGGCGCCGAT TGATTTTTCC AACAAGGGCG CGATGGGTCC GTTTCCCAAG
TGGCTGAAGG AGGAATATTT CAACCTCGAC GCCATTCTGG AGCAGACGGG CAACTACCCT
GGCGAAATGA TCGATGTCGG CAGCAAACTG CTCAAGCCGG TCGAAAATCT GGTTGGTAAT
TACCTGCGCT TGCTCGATAA CCTCGATGAC CCGAAGATCG TCGAGTCGTG GCAGGCGATG
AATACCTGGG TGAGCGATGG GGTGCCGTTT GCTGGCGCTG CCTATCGTCA ACTGGTCGTC
GATCTCTACC GCGAAAATCG GTTGATGAAC GGTACCTGGA TCATGCGCGG GCGCCCGGTC
AACCTGGGAG ACATCAAAGC GTCGCTGCTC AACATTATCG CGCGGCAGGA TCATATCGTC
CCGCCGTGCC AGTCGGAAAC CATCCTGGAT CGCGTGAGCA GCATCGATAA ACATCAGATC
ATTATGCCAG GCGGTCATAT CGGTATTATG GCTGGCAGCG GGGCGCGTCG TGGTCTGTGG
CCGCAAATCG ATGCCTGGCT CGCCGATCGA TCGATCTAA
 
Protein sequence
MTTSPETTLF PVDPATVAKN LYAEVERLGK AYEMGVKIAT GKQRAKVAQT PKEAIWTLNK 
TTLYHYYPQA PAEKRKRVPL LLVFALINKP YIFDLRPGNS FVEYMVQQGY DVYLVDWGAP
GPEDAHLTFD DYALEYLPRA VRRMQMHSGQ RDFSMLGWCI GATLAAIYAA MRPDDGLRNL
ILLTAPIDFS NKGAMGPFPK WLKEEYFNLD AILEQTGNYP GEMIDVGSKL LKPVENLVGN
YLRLLDNLDD PKIVESWQAM NTWVSDGVPF AGAAYRQLVV DLYRENRLMN GTWIMRGRPV
NLGDIKASLL NIIARQDHIV PPCQSETILD RVSSIDKHQI IMPGGHIGIM AGSGARRGLW
PQIDAWLADR SI