Gene Rcas_0101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0101 
Symbol 
ID5537560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp122003 
End bp122716 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content61% 
IMG OID640892265 
ProductDtxR family iron dependent repressor 
Protein accessionYP_001430255 
Protein GI156740126 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCTG ACACAACTCG ACACGCCAGA GCACGACGCA AACCGGGCGA CGCCGGACCA 
ACCGAAAAGA TGCGCGAGTA TCTGGAGGTT ATCTATTACC TGGCGGCGCG TGGCGAACCG
GTTATCAGCG CGCGGTTGGC GGAATGGATG CATGTGACCC CCCCAACTGT CGCCGATATG
GTGAGCCGTA TGGAGGATCG CGGCTATATC GTGCGCGATG GGCGCGGTGA GATTTTGCTG
ACCGACGAAG GGTTTCGTCT GGCGGAAGCC ATGGTACGGC GACACCGCAT TCTGGAGCGT
TTCCTCGTCG ATGTGATGGG CATGCAGTGG CACGAAATTC ACGAGGAAGC GGTGCGCCTC
GAACACGCGC TCTCGCCGCG TCTGGAAGAA CGGATCGAGG AACTGGTCGG CGAGGCGACC
ACGTGCCCGC ACGGCAATCC CATTCCTGGA CGTTGCGACG TCTATGCCGG CACGGTGCGC
CTCGATCAGG CGACTCCTGG CGGCGTCTTT ACCCTGCGGC GCATCGCGGA AGAGGCAGAA
GAAGATACGG TGCTGATTCG GTACTTACAG AACAGCCATC TGGTGCCGGG TGAGCAGTTT
GCTGTGATTG ATGTCTCTCC GGTGTACGGC GTCACGCTTC AACGCGATGA CCGGCAGATT
ACCCTTTCGC CGCAGATCGC CGCCTACCTC TGGGGCGACG TGACGCCTAC TTAA
 
Protein sequence
MMADTTRHAR ARRKPGDAGP TEKMREYLEV IYYLAARGEP VISARLAEWM HVTPPTVADM 
VSRMEDRGYI VRDGRGEILL TDEGFRLAEA MVRRHRILER FLVDVMGMQW HEIHEEAVRL
EHALSPRLEE RIEELVGEAT TCPHGNPIPG RCDVYAGTVR LDQATPGGVF TLRRIAEEAE
EDTVLIRYLQ NSHLVPGEQF AVIDVSPVYG VTLQRDDRQI TLSPQIAAYL WGDVTPT