Gene Rcas_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0090 
Symbol 
ID5537549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp111188 
End bp113281 
Gene Length2094 bp 
Protein Length697 aa 
Translation table11 
GC content64% 
IMG OID640892255 
Productmolybdopterin oxidoreductase 
Protein accessionYP_001430245 
Protein GI156740116 
COG category[C] Energy production and conversion 
COG ID[COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0958221 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACCCC CCGACCGCAT CCGCCTGGTG CGCGGCGCAT GCCCGCACGA TTGCCCCGAT 
ACCTGCGCGA CGATCACAGA GGTGCAGGAT GATCGCGCGG TACGGTTCTA CGCCGATCCT
GACCATCCGT TTACCAGAGG GTGGCTCTGC GCGAAAGTGC GTCCATACCT GGAGCGGGTG
TACGCTCCCG ACCGCCTGCT CTACCCGCTG CGGCGCGTTG GTCCGAAAGG CGGCAACCGC
TGGGAACGCA TCACGTGGGA AGCAGCAATC GATGAGATTG CGACCCGCTG GAAGGAGATT
ATTGCCCGCT ACGGCGCGGC TGCCATTCTG CCCTATTCCT ATAGCGGCAC GCTCGGTTTA
GTGCAACTCA TGATCTGCAA TGCGCGCCTG TGGAATCGGA TGGGCGTGAG TGGGTTGCAA
CGCAGCATCT GCGGCGCAGC CGCCGAAGCC GCCGTCGAAG CGACCCTCGG CGCGCGCTGG
TCGCCCGATC CGGCGGATGT GCTCCATAGC AAACTGGTGC TCATCTGGGG GCACAATCCC
GCCAGCACCG GTCCACACTT CATGCCGTTG CTGCGGCAGG CGCAGAAACG TGGCGCTTAT
GTGGCAGTGA TCGATCCGCG CCGCACGCTG ACGGCACGCA GCGCCGATGA GCACATCCGT
CCGCGCCCGG CGACCGATGC CGCGCTGGCG CTCGGCATGA TGCACGTTAT TTTCAGCGAA
GGGTTGCACG ATGAAGCCTG GCTTGAACAG CACACTATCG GCTGGCGCGA CCTGCGCGAC
CGCGCTGCCG GGTATCCGCC CGATCGGGCG GCAGCCATCA CCGGCGTGCC GGAGGCGACG
ATCATTGCGC TTGCTCGACG CTATGCAACA ATGAAACCGG CGCTGCTCAA GACTGCTGAT
GGCGTGCAGC GTCACGGCAA TGGCGGGCAG ACGTTCCGCG CCCTCTGCTG CCTGCCCGCA
GTCGTCGGGC AGTATGGCGT GCGCGGCGGA GGATTATCGT ATAGCACGAG CGGGTATGTC
CGCTGGGACG CCGAAGCCGT CGGTCATGCC TCGGAGTGCC CGCCAACGCC GCGAGTGGTG
AACATGAATC GCCTCGGCGC CGCACTTACT GGCGAGGTCC GCGATCCGCC GATCATGGCA
CTGTTCGTGT TCTGCGCCAA TCCGGTCACG TCTGCTCCCA ACGCCGGGTT GATCGTGCAG
GGGTTGCTAC GCGACGATCT GTTCACCGTC GTTCACGAGC AGTTCATGAC CGATACGGCG
CGCTACGCCG ATATTGTCCT GCCCGCAACC ACGCAACTGG AGCATGTCGA TCTGCACAAG
GCGTATGGGC ATCGCTATCT TCAGTATAAC CATCCGGCGG TTCCGCCCCC TGGCGAGTGC
AGGAGCAACT GGGACGTGAT GCGCCTGCTG GCGCGTGCTA TGGGATATAC TGAACCCTGG
CTCCACGAAG ATGCTGAACA GGCGATCTGC GGCGTGCTCG ACGCTACCCG CGCGCGTAAC
CCGTTGCTCG AAGGGATCAC GCTGGAACGT CTCCAGGCGG AAGGAACGGT TCCGCTCTCC
TTTCCACCAG GGCGCGATGT TCCCTTCGCT GATGGATACT TCCCAACTCC ATCGGGGAAG
GTGGAGTTGC GCTGCGACTC GCTGCGCGTC CACGGTCTCG ATCCGTTGCC GGAGTACGCA
CCGCCTGCGG AGTTCCGCGC GGTTGGCGAC TATTCAGCAC ATGGGCATCC ACCGTCGCTG
GTGCTGATCT CCGGCGCATC GCACCACTAC GTCTCGTCGA GTTTCGCCAA TCAGCCCAGT
TTGCGCGCAA AAGAGGGAGC GCCCTTCATC GAGATCAATC CTGTGGATGC CGTCGCGCGC
GGTATTCGCC ACGGCGATGA GGTCCACGTC GAAAGTGCGC GCGGATGGTG CCGTCTGCTC
GCGGTGGTGA CCGATGACGC GCCGCCTGGC GTCGTGATCG CCCCCAAAGG ACCATGGGCG
AGCCTGTCGC CCGACGGTCG TAACGTCAAT TGGGTGACGC CCGACGCGCT GGCGGACCTT
GCCGGTCAAA GCACGTTCCA CAGCAATCTG GTGCAGGTGC GGCGGGCAGA ATGA
 
Protein sequence
MIPPDRIRLV RGACPHDCPD TCATITEVQD DRAVRFYADP DHPFTRGWLC AKVRPYLERV 
YAPDRLLYPL RRVGPKGGNR WERITWEAAI DEIATRWKEI IARYGAAAIL PYSYSGTLGL
VQLMICNARL WNRMGVSGLQ RSICGAAAEA AVEATLGARW SPDPADVLHS KLVLIWGHNP
ASTGPHFMPL LRQAQKRGAY VAVIDPRRTL TARSADEHIR PRPATDAALA LGMMHVIFSE
GLHDEAWLEQ HTIGWRDLRD RAAGYPPDRA AAITGVPEAT IIALARRYAT MKPALLKTAD
GVQRHGNGGQ TFRALCCLPA VVGQYGVRGG GLSYSTSGYV RWDAEAVGHA SECPPTPRVV
NMNRLGAALT GEVRDPPIMA LFVFCANPVT SAPNAGLIVQ GLLRDDLFTV VHEQFMTDTA
RYADIVLPAT TQLEHVDLHK AYGHRYLQYN HPAVPPPGEC RSNWDVMRLL ARAMGYTEPW
LHEDAEQAIC GVLDATRARN PLLEGITLER LQAEGTVPLS FPPGRDVPFA DGYFPTPSGK
VELRCDSLRV HGLDPLPEYA PPAEFRAVGD YSAHGHPPSL VLISGASHHY VSSSFANQPS
LRAKEGAPFI EINPVDAVAR GIRHGDEVHV ESARGWCRLL AVVTDDAPPG VVIAPKGPWA
SLSPDGRNVN WVTPDALADL AGQSTFHSNL VQVRRAE