Gene Rcas_0083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0083 
Symbol 
ID5537542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp103142 
End bp104125 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content62% 
IMG OID640892248 
Productribose-phosphate pyrophosphokinase 
Protein accessionYP_001430238 
Protein GI156740109 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0462] Phosphoribosylpyrophosphate synthetase 
TIGRFAM ID[TIGR01251] ribose-phosphate pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0312629 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAGTC GCTTTGATGA GCTTCGCATT CTTTCGGGCA ATGGCAACCC TGCCCTGGCG 
CAGTCCATCT GCGGTCGCCT GGGGGTGCGC CTGGGAGACG TAACGATCAC CCGCTTTGCC
AATGAGAATA TTTTTGTGCG CCTGAATGAA AGCGTGCGCG AGAAAGATGT GTTTGTCATT
CAGTCGTTGG CGTCGCCCTT GAGCGACCGC ATTCTCGAAC TGCTGATCAT GCTGGACGCC
TGCAAACGCG CATCTGCCGG GCGGGTGACG GCGGTGCTGC CGTTCTACGC CTACGGGCGC
ACCGATAAGC GTGATCAACC ACGGGTGCCG ATCACCGCGC GATTACTCGC TGATATGATC
CAGGTTGCCG GTGCGCAGCA AGTGGTAACG ATCGACCTGC ACGCCGGGCA GATTCAAGGG
TTTTTCAGCA TTCCCGTCGA TGAGTTGAGC AGCATGCCGT TGCTGGTGCG CTACTTCCGC
GATCGCGGAT GGGACGATGT GGTGGTCGTG TCGTCGGACA TCGGGTTTGC CAAGCGGGCG
CGCAATTTCG CCGAACAACT CGGGACGCCG CTGGCAATCA TCGAAAAGCG TCACCCGGCG
CGCGCCGATG CCGAGAGCGA AAACGGCATC GAGGCAATGT CGCTGATCGG CGAGGTCGCC
GGACGGCGCT GCATCCTGGT GGATGATGAA GTGAACACCG GACGCTCGCT CGCCAGTGCA
GCAGAACTGC TGGAACGCCA TGGCGCGCGC GAGATCTACG CAGCCGTTGC CCATCCGGTG
CTCGGCGGCG ATGGACCGGA ACGCCTGCGC GCCAGTCGCA TCCGCGAATT GGTGACGACC
GATACGCTGC CGGTTCCGGC GGAAAAATCG TGGCCCGGCC TGCGCATCCT GACTGTCGCT
CCAATGCTGG CGGAGGTCAT TCAACGCATC CATAGCGGCG TCTCAGTGCA TACCATCTTC
CCGCCGCGCG CGCTGGCGCG GTGA
 
Protein sequence
MSSRFDELRI LSGNGNPALA QSICGRLGVR LGDVTITRFA NENIFVRLNE SVREKDVFVI 
QSLASPLSDR ILELLIMLDA CKRASAGRVT AVLPFYAYGR TDKRDQPRVP ITARLLADMI
QVAGAQQVVT IDLHAGQIQG FFSIPVDELS SMPLLVRYFR DRGWDDVVVV SSDIGFAKRA
RNFAEQLGTP LAIIEKRHPA RADAESENGI EAMSLIGEVA GRRCILVDDE VNTGRSLASA
AELLERHGAR EIYAAVAHPV LGGDGPERLR ASRIRELVTT DTLPVPAEKS WPGLRILTVA
PMLAEVIQRI HSGVSVHTIF PPRALAR