| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0066 |
|---|
| Symbol | |
|---|
| ID | 5537525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 81867 |
|---|
| End bp | 83078 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892232 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_001430222 |
|---|
| Protein GI | 156740093 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000558926 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00313159 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGAC GAGTGTTTCT TCGCAGCGTC GCGGCGGGCA GCGCAGCCCT GACGGCTGCT
ACGCTGGCAG CGTGCGGCCA GGCTCCGCAG ACGCCAGCCC AGCAGGCGAC GACTGCCCCG
GCTCAACAGG CGACGACCGC CCCGGCTCAG CAGGCGACGA CCGCGCCGGT AGCGACTGCG
CCACAGGCGC AGGCGCCAGC CCAGACGAGC GAAATGCCAT CCATTGAGTG GGACATGGCC
ACCAGTTGGC CCGTTGCACT CGACACGATC TTTGGCGGTG CGCAAACGGT CGCTGATCGT
GTCGCAGCGA TGACCGACGG GAAGTTCAAA ATTACGCCGC GCGCCGCCGG TGAACTGGCG
CCCGGTCTCC AGGTGCTCGA TGTGGTGCAG CAAGATGCCG TTCCGATTGG CCATACCGCG
TCGTATTACT ATGTCGGCAA AAGCCCGGTC ACGGCATTCG GCACATCGCT GCCTTTTGGT
CTCAATGCAC AGCAGCAGAA TGCCTGGTTG TACGATGGCG GCGGTTTAGA GAAGTTGCAA
GCGGTGTACG CCAAACTGTT TGGCGTCATT CAGTTTCCGG CCGGCAACAC CGGCGTTCAA
ATGGGTGGCT GGTTCCGCAA GGAAATTAAC ACTGTCGCTG ATCTCCAGGG TCTCAAGATG
CGTATCCCCG GCCTCGGCGG GCAGGTGATG ACGAAACTCG GCGTCACGGT GCAGGTCATT
GCAGGCGGTG AGATCTTCCA GGCGCTCCAG ACGGGCGCTG TCGATGCGGC AGAATGGGTC
GGTCCGTATG ACGACGAGAA ACTCGGTCTG AACAAGGCAG CACAGTTCTA CTACTATCCG
GGTTGGTGGG AGCCGGGTCC TACGCTCGAA GTGCAGGTCA ATCTCAATCG CTGGAATGAG
TTGCCCAAGA CGTATCAGGA GGCGATCAAG ACCGCATCAG CCGAGGCGAA TATCACGATG
CTTGCGCGCT ACGACGCACG CAACCGCCAA GCCCTCAAGC GTCTGGTGGA CGGCGGTGTG
CAATTGCGTC CGTATAGCAA AGAAATCCTC GACGCTGCCG AGAAGGCCGC TTTTGAGCTG
TACGACGAGT TCGCCGCCAA GGATGCCGAT TTCAAGGCGA TCTACGAGGA ATGGAAAGCA
TTCCGCACGG CGATCTACGA GTGGAATAGG GTGAACGAGG CAGGGTTCAC CAACTACGTC
TACAGCAAGT AG
|
|---|
| Protein sequence | MRRRVFLRSV AAGSAALTAA TLAACGQAPQ TPAQQATTAP AQQATTAPAQ QATTAPVATA
PQAQAPAQTS EMPSIEWDMA TSWPVALDTI FGGAQTVADR VAAMTDGKFK ITPRAAGELA
PGLQVLDVVQ QDAVPIGHTA SYYYVGKSPV TAFGTSLPFG LNAQQQNAWL YDGGGLEKLQ
AVYAKLFGVI QFPAGNTGVQ MGGWFRKEIN TVADLQGLKM RIPGLGGQVM TKLGVTVQVI
AGGEIFQALQ TGAVDAAEWV GPYDDEKLGL NKAAQFYYYP GWWEPGPTLE VQVNLNRWNE
LPKTYQEAIK TASAEANITM LARYDARNRQ ALKRLVDGGV QLRPYSKEIL DAAEKAAFEL
YDEFAAKDAD FKAIYEEWKA FRTAIYEWNR VNEAGFTNYV YSK
|
|---|
| |