| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0048 |
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| Symbol | |
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| ID | 5537506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 63354 |
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| End bp | 64361 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640892213 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001430204 |
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| Protein GI | 156740075 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.11245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGATG ACCTTCCGAC ACAGTATCAC ATCGGGGCGA TAACAATTCA GCCCAACATC
GTGCTTGCGC CGATGGTTGG CGTCACCGAC AGCATCTTTC GCCGCATGAT TCTGAGCCTG
GGCGGGTGCG GTCTGGTGTG CAGCGAAATG ACCAATGCCT CAGCAGTCAG CCCGCGCGCG
CGCAGCCGCC ATCGCCAACT CGATTATTTG CCGGAAGAAC GCCCGATTGC AATGCAGTTG
AGCGGCAGCG AGCCGGACCT GGTTGCGGCG GCTGCGCGCG TCGTCGAAGC GTTGGGCGCA
GACATCCTCG ATATCAACTG CGGTTGTCCT TCGCCCAAAG TGACGGGCGG CGGGCATGGC
TCGGCGCTCC TGCGCGATCT GCCGAAAATG GAACGGTTGC TCAAAGCGGT GTGCGCCGCA
GTGCAGATTC CGGTAACACT CAAGTTTCGC GCTGGCTGGG ACGACGAGAA CCTGAACTAT
CTGGATACCG CAAAAATGGC GGAGCAGGTC GGTGTTGCGG CGCTGGCGCT GCATCCGCGC
ACGCGCGCGC AGGGGTACAG TGGCGTCGCC GATTGGCGTC GCGTTGCTGA CGTCAAACGC
GCTGTGCGCA TTCCCGTTAT TGGATCGGGT GATGTGCGCG ACGCAGCCGA TGCACTACGA
CGCCTGCGCG AGAGTGGCGC CGATGGCGTG ATGATCGGAC GGGCGGCGAT GCACAATCCA
TGGATCTTTC GTCAAATTGC TCAATTGCGC GCGGGAACGC AGCCGATGGT GGTCACCCCT
TCCGACAAGT ACGAGTTTTT GATGCACTAC TTGGACATGT GCCACGAAGC GTTGCCAGAG
CGGCTTGCGC TGAACAAATT GAAACAACTT ATCGGGCAGT TTGGTATTGA GTTGCCCGGC
GCCGCAGCAT TGCGGAGCGC TATCCACCAT TCGTCCGGCG TCGCCGAGGC GCGCGATCAT
CTGGAGCGAT TCTTTGCGCA GTATGTTGAA ACGGCGGTAA TCGGTTGA
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| Protein sequence | MYDDLPTQYH IGAITIQPNI VLAPMVGVTD SIFRRMILSL GGCGLVCSEM TNASAVSPRA
RSRHRQLDYL PEERPIAMQL SGSEPDLVAA AARVVEALGA DILDINCGCP SPKVTGGGHG
SALLRDLPKM ERLLKAVCAA VQIPVTLKFR AGWDDENLNY LDTAKMAEQV GVAALALHPR
TRAQGYSGVA DWRRVADVKR AVRIPVIGSG DVRDAADALR RLRESGADGV MIGRAAMHNP
WIFRQIAQLR AGTQPMVVTP SDKYEFLMHY LDMCHEALPE RLALNKLKQL IGQFGIELPG
AAALRSAIHH SSGVAEARDH LERFFAQYVE TAVIG
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