Gene Rcas_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0048 
Symbol 
ID5537506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp63354 
End bp64361 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content60% 
IMG OID640892213 
ProductnifR3 family TIM-barrel protein 
Protein accessionYP_001430204 
Protein GI156740075 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.11245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGATG ACCTTCCGAC ACAGTATCAC ATCGGGGCGA TAACAATTCA GCCCAACATC 
GTGCTTGCGC CGATGGTTGG CGTCACCGAC AGCATCTTTC GCCGCATGAT TCTGAGCCTG
GGCGGGTGCG GTCTGGTGTG CAGCGAAATG ACCAATGCCT CAGCAGTCAG CCCGCGCGCG
CGCAGCCGCC ATCGCCAACT CGATTATTTG CCGGAAGAAC GCCCGATTGC AATGCAGTTG
AGCGGCAGCG AGCCGGACCT GGTTGCGGCG GCTGCGCGCG TCGTCGAAGC GTTGGGCGCA
GACATCCTCG ATATCAACTG CGGTTGTCCT TCGCCCAAAG TGACGGGCGG CGGGCATGGC
TCGGCGCTCC TGCGCGATCT GCCGAAAATG GAACGGTTGC TCAAAGCGGT GTGCGCCGCA
GTGCAGATTC CGGTAACACT CAAGTTTCGC GCTGGCTGGG ACGACGAGAA CCTGAACTAT
CTGGATACCG CAAAAATGGC GGAGCAGGTC GGTGTTGCGG CGCTGGCGCT GCATCCGCGC
ACGCGCGCGC AGGGGTACAG TGGCGTCGCC GATTGGCGTC GCGTTGCTGA CGTCAAACGC
GCTGTGCGCA TTCCCGTTAT TGGATCGGGT GATGTGCGCG ACGCAGCCGA TGCACTACGA
CGCCTGCGCG AGAGTGGCGC CGATGGCGTG ATGATCGGAC GGGCGGCGAT GCACAATCCA
TGGATCTTTC GTCAAATTGC TCAATTGCGC GCGGGAACGC AGCCGATGGT GGTCACCCCT
TCCGACAAGT ACGAGTTTTT GATGCACTAC TTGGACATGT GCCACGAAGC GTTGCCAGAG
CGGCTTGCGC TGAACAAATT GAAACAACTT ATCGGGCAGT TTGGTATTGA GTTGCCCGGC
GCCGCAGCAT TGCGGAGCGC TATCCACCAT TCGTCCGGCG TCGCCGAGGC GCGCGATCAT
CTGGAGCGAT TCTTTGCGCA GTATGTTGAA ACGGCGGTAA TCGGTTGA
 
Protein sequence
MYDDLPTQYH IGAITIQPNI VLAPMVGVTD SIFRRMILSL GGCGLVCSEM TNASAVSPRA 
RSRHRQLDYL PEERPIAMQL SGSEPDLVAA AARVVEALGA DILDINCGCP SPKVTGGGHG
SALLRDLPKM ERLLKAVCAA VQIPVTLKFR AGWDDENLNY LDTAKMAEQV GVAALALHPR
TRAQGYSGVA DWRRVADVKR AVRIPVIGSG DVRDAADALR RLRESGADGV MIGRAAMHNP
WIFRQIAQLR AGTQPMVVTP SDKYEFLMHY LDMCHEALPE RLALNKLKQL IGQFGIELPG
AAALRSAIHH SSGVAEARDH LERFFAQYVE TAVIG