| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0029 |
|---|
| Symbol | |
|---|
| ID | 5537486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 36569 |
|---|
| End bp | 38632 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640892194 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001430186 |
|---|
| Protein GI | 156740057 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.642435 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCG CCGCACCGAC ACCGCCCATC GTCGAAGACG AGGACGTCAC CGCAGCAAAC
GGTTCGCCAT CCACGGAACC TATCGCTGCA ATCAGCGATT CGCGCCCGCG TTCGTATGCC
GGCGCCAACC TGATGGTGTT GCTCCTCGCA ACCCTGGCTC TCGCCTGGAT CGGTCAGACG
TTGCTGACGA TCACGCCGCC GAATCTGCTG GCGGGAATCG CGCTGCTGAC ACTTGCCGGT
GTGGCGTTCG TTGCGCTGGA GGCGTGGATG CCTCAACGGA CGATGGCAGA GGACCCCGGC
GTTGCACCCC GGTTCGTTGT GCTGCTGGAT CGTCTTCCTC CATTTTACCT GTTGTTTTTC
CTGGCGCTTG TGAGCAGCAG TATTGCCTTC TGGTGCACGG CGACGCCAGC GCTGCGCCCC
ATGCCAGCAC TGATCGCGTG GCTGGCGAGC ATGGGCTTCT TTCTGATTGG AACGCGATAC
CTGGAACATC CGACTGATAG CCACGCGCAG GAAGAACCAT GGGATCGGCG CGAGATGCTG
GCAATCGCCG CTCTCACCCT GCTGGCGCTC GCGCTGCGCT TAACCTTCAT CGACGCCATC
CCGCAAAACT TCGGCGGCGA CGAGGGCGAG ATGGGTATGG AGGCGCGCGG AGTGCTGGAA
GGGCGCATCA CCAACCCGTT CGTCACCGGA TGGCTGTCGC ATCCGACGCT CTGGTTCTTC
CTTCAGGCGC TCTCACTGAG CACCCTGGGC AATAATGTCT TCGGGCTGCG CGCTCTGTCG
GCGCTGATCG GCACGGCGAC CGTTCCGCTC TTCTACCTGT TTGTGCGCCC GCTCTTCGGG
CGCGGCGTGG CCGCCGGCGC GGCCACCCTC CTCGCCGTAT TTCATTTCCA CATTCATTTC
AGCCGATTGG GAGTCAACAA TATCGTCGAT CCTTTCCTGG CATTGTCCGC ATTCGCAGCA
TTCTTTGCCG CCGTGCGCCG ATCGTCGTCC TTTGCTCTGG GATGGACGGG GGTCATTTGT
GGCGTTGCGC AGCATTTCTA CATGGGCTCG CGGTTGACAC CGGTAGTGAT CGCCGTTCTC
GTGGCGCACC TGGCTATCGC CGACCGGCGC CGCTTCCGCT GGCTGGCGCC GCGCCTGCCC
TTGATGGTCG CCGGGTTTCT GCTGGGGTTT GGACCCCTGA TCGCTCATTT CATCGCGGAC
CCATCCGCGT TTACGGCCCG CCTGGCGATG GTTGGCGTGG TGCAGAGCGG GTGGCTGGAA
CAGAAACTGG CGGAAGGAGT CCCGCTGACA CAGATCATCA TCGACCAGGC GCGCCAGAGT
TTTGGCGCGT ACACGTTTGT GCCGGATCGC AGCGCCTGGT ACGATCCGAA CATCGCACTG
CTCGACTCGG TCTCCGCGGT CCTGTTGGTG CCGGGTGTGG CGCTTGCGCT GGTCAACTGG
CGTCGCTCCG AGTGGGTCCT CCCGATTGTA TGGTTGACGG GCGCGGCGAT TCTGGGTGGA
ATGCTGCTGG TGAACACTCC TGAAAGTCCA CGGTATGTCA CGACCGCTCC GGCGCTCTGC
CTGCTGGTGA TGCTTGCACT TCAGCACATC GCAAACCTGG CGGATCGGGC GTTTCGCTGG
ACTGATCACC GGCGCGCATT CATAATAGTC GTGCTGGTTG CGCTGCTGGC GGGATGGAAT
CTGAACTTCT ACTTCCGCGA CTACATCCCG CGCCGCGCGT ATGGCTGGAC GAACACCGAA
ATCGTCACCA AACTGGCACA CTACGCGAAT GCGCAACCGG CGCCGGTGTA TGTGTATATG
TTCACGCCAC CACGCATTTT CTTTGGAAAT GGAACCATCC GCTTCCTCGC CGCCGGTATC
AAGGGCATAG ATGTGCTCGA TCCGGTGACC GACCCGGCGC AGATCATGCC GCCTCCCGAC
GGACGACGCC CGCTCTTCAT CTTCCTGCCG GAGCGCGAAG CAGAACTGAC AATCGTGCAG
CAACGCTTCC CCGGCGGCAC GGTCGAACGT TTTCAGGGAG AATGGGAGCC GGTTGTCCTC
TTCATTGCCT ATACACCCCC CTGA
|
|---|
| Protein sequence | MKSAAPTPPI VEDEDVTAAN GSPSTEPIAA ISDSRPRSYA GANLMVLLLA TLALAWIGQT
LLTITPPNLL AGIALLTLAG VAFVALEAWM PQRTMAEDPG VAPRFVVLLD RLPPFYLLFF
LALVSSSIAF WCTATPALRP MPALIAWLAS MGFFLIGTRY LEHPTDSHAQ EEPWDRREML
AIAALTLLAL ALRLTFIDAI PQNFGGDEGE MGMEARGVLE GRITNPFVTG WLSHPTLWFF
LQALSLSTLG NNVFGLRALS ALIGTATVPL FYLFVRPLFG RGVAAGAATL LAVFHFHIHF
SRLGVNNIVD PFLALSAFAA FFAAVRRSSS FALGWTGVIC GVAQHFYMGS RLTPVVIAVL
VAHLAIADRR RFRWLAPRLP LMVAGFLLGF GPLIAHFIAD PSAFTARLAM VGVVQSGWLE
QKLAEGVPLT QIIIDQARQS FGAYTFVPDR SAWYDPNIAL LDSVSAVLLV PGVALALVNW
RRSEWVLPIV WLTGAAILGG MLLVNTPESP RYVTTAPALC LLVMLALQHI ANLADRAFRW
TDHRRAFIIV VLVALLAGWN LNFYFRDYIP RRAYGWTNTE IVTKLAHYAN AQPAPVYVYM
FTPPRIFFGN GTIRFLAAGI KGIDVLDPVT DPAQIMPPPD GRRPLFIFLP EREAELTIVQ
QRFPGGTVER FQGEWEPVVL FIAYTPP
|
|---|
| |