| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0024 |
|---|
| Symbol | |
|---|
| ID | 5537481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 30940 |
|---|
| End bp | 31614 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892189 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001430181 |
|---|
| Protein GI | 156740052 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.471332 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00220906 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGC CATCTGCTGA TATCATCCGG CGTGCGCAGG CTGGTGATCC CGAAGCGTTG
ACGCAACTCG TGCTTAGTCA GCAGCAGTAT GTCTACAGCA TTGCCATGAG CGTGCTGAAG
AATCCCGATG ACGCTGCGGA TCTGACGCAG GAAGCGTTTA TTCGTCTGTT CCGCGCACTG
CCGCAGTACA ATGGCGAGAG CCGATTCACG ACCTGGCTCT ACCGCCTGGT CGTGAACCTG
GGACGCGACG AACTGCGTCG CCGTGGGCGG CAGGCGCCGC TGGCGTCTCC GGCAGACGGC
GATGAGGAAC TCGATGCAAT CGATGTCATC GCCGACGATG ATCGCTGGTC GGACCCGGAG
GAAGCGCTTG ACTCGCGTGA ACTACGCAGC GAAGTGCGTC GCGCATTGGC GCAACTCGAG
GAGCATTATC GCCTGGTGCT GACACTCTAT TACTTCGAGG ACATGAAATA TACCGACATT
GCCGAGATCC TCGACCTGCC GCTCAACACG GTCAAAAGTC ACATTCGGCG CGGGAAGGAG
CGCCTGGCGG CCATTCTCCA GGAGCGTGAG CAACCGCCGG CTGCACGCGC ACTGCCGGCG
CCAACGCAAC CGGAGACCGG GAGCAGACCG TTCAGCCCGT TTATGCGGTT GCCTGCGCCG
GTTGGGGGGA GGTAA
|
|---|
| Protein sequence | MAEPSADIIR RAQAGDPEAL TQLVLSQQQY VYSIAMSVLK NPDDAADLTQ EAFIRLFRAL
PQYNGESRFT TWLYRLVVNL GRDELRRRGR QAPLASPADG DEELDAIDVI ADDDRWSDPE
EALDSRELRS EVRRALAQLE EHYRLVLTLY YFEDMKYTDI AEILDLPLNT VKSHIRRGKE
RLAAILQERE QPPAARALPA PTQPETGSRP FSPFMRLPAP VGGR
|
|---|
| |