| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0007 |
|---|
| Symbol | |
|---|
| ID | 5537464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4718 |
|---|
| End bp | 6460 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640892172 |
|---|
| Product | phosphotransferase domain-containing protein |
|---|
| Protein accession | YP_001430164 |
|---|
| Protein GI | 156740035 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1796] DNA polymerase IV (family X) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0296814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000565114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAT ACCCGACTAA TCACGATATT GCGGAAGTTT TCAGCGCCAT TGCCGATCTG
ATGGAGATTC TGGACGAGGA TCGGTTTCGC GTGCAGGCGT ATCGGCGCGC CGGCGATGTG
ATTCGTCATC TGCCGGCGCC GCTGGCGACC TACCGCGCTC GCGGTGAATT AGAGCAGATC
CCTGGCGTTG GCAAAGCCAT CGCCGAAAAG ATCGGCGAAC TCCTCGATAC CGGGGAGTTG
CCGTACTACA ACCGGCTCCG GGAGAAGGTT CCTCCCGGCG TGCGTGAATT GCTGCGCGTT
CCTGGCATCG GTCCGCGCAC TGCCGGTCGC CTCTACCGCG AACTCGGGAT CACCAGCCTG
GCAGAGTTGA AGGTTGCTGC CGAAGCCGGG CGCCTGGCGG CCCTTAAGGG GTTTGGTGCG
AAAACCATTG ACAGCATTCT GCAAGGCATC AGCGCGGCGG AGCGGCAGGA GCGTCGGATG
CTGCTGGCGC ACGCGATCGA TAGTGCCGAA GCGTTGATCA ACGCTCTGCG CGCCGCTGTG
CCGGCGCTGA GTCAGGCGGC GTATGCCGGC AGCCTGCGCC GTGGCCGCCC CACTGTTGGC
GATCTCGACA TTCTGGCGGC TGCCGATGAT GCGCCCGCTG TTGTGCGCGC CTTTACGATG
CTGCCGCTCG TGGCACGGGT CGAGTCGGCA GGGGACGAAA AAGCCAGCAT TCTGCTCCAT
AATGGCATGC AGGCGGACCT GATCGCGGTT CCGCCGGGCA TGTGGGGGTC GGCGTTGCAG
CACTTTACCG GCAGTAAAGC GCACAATATC CACTTTCGTG AGCTGGCGCT GGCGCAGGGA
TTGAGTTTCA GCGAGCATGG CTTCCGTCGT GCCGATGGCA CGCTGCTGAC ATGCGCCACC
GAGGAAGAGG TGTACGCTGC CATCGGTCTG CCCTGGATTC CACCGGAATT GCGCGAGGAC
GAGGGGGAGT TCGAGGCGGC GCGCGCCGGC ACGTTGCCGT GCCTGGTCGA ACTCAGCGAC
ATCCGCGCCG ATCTCCATCT GCACAGCACC TGGAGCGACG GACGCGCCGA TATTCGCACC
ATGGCAGAAG CCGCGCGCAC CCGTGGCTAT TCCCATATCG CTATCACCGA CCATAGCGCG
TATATGGGGA TGACTCACGG ATTGGATGCA GAGCGCCTGC GCGCACAGCG CCAGGAGATC
GCAGCATTGA ATGCCGAATA TGCGGCGCGC GGTATTCCGT TTCGCATCCT GCACGGCGTC
GAGGTCGATA TCACTCCTGA AGGAAATCTG GCATTGCCCG ACGATGTGCT GGCGGAACTC
GATATTGTTG TCGCTTCGGC ACATATTCAG TTGCGTCAGT CGCCCGAAGC AGCGACCGAG
CGGTTGATCC GCGCCGTGCG CAATCCGCAC GTCGATATCA TCGGGCATCC GGTGGGGCGG
ATGCTGGGAT CACGCGACGG CGCGCCGGTC GATATCGATG CGCTGGCGTA TGCCGCTGCC
GAGCATCGCG TGCTGCTGGA GGTCAACAGC GGACCGCACC GCCTCGACCT GGATGGCGCC
GCAGTGCGGC GCGCGCTGGC GTCTGGCGCT GTCATTACCA TCAACAGCGA TGCGCACCAT
CCCGACAATC TGGCGTGGAT GCGGTTCGGC GTCGTCACGG CTCGGCGCGG TTGGGCTGGT
GCGGCGCAGG TGGCGAACAC CTGGAGTGAT GAAGCGCTTC AGGAGTGGTT GAGTCGACGT
TGA
|
|---|
| Protein sequence | MTAYPTNHDI AEVFSAIADL MEILDEDRFR VQAYRRAGDV IRHLPAPLAT YRARGELEQI
PGVGKAIAEK IGELLDTGEL PYYNRLREKV PPGVRELLRV PGIGPRTAGR LYRELGITSL
AELKVAAEAG RLAALKGFGA KTIDSILQGI SAAERQERRM LLAHAIDSAE ALINALRAAV
PALSQAAYAG SLRRGRPTVG DLDILAAADD APAVVRAFTM LPLVARVESA GDEKASILLH
NGMQADLIAV PPGMWGSALQ HFTGSKAHNI HFRELALAQG LSFSEHGFRR ADGTLLTCAT
EEEVYAAIGL PWIPPELRED EGEFEAARAG TLPCLVELSD IRADLHLHST WSDGRADIRT
MAEAARTRGY SHIAITDHSA YMGMTHGLDA ERLRAQRQEI AALNAEYAAR GIPFRILHGV
EVDITPEGNL ALPDDVLAEL DIVVASAHIQ LRQSPEAATE RLIRAVRNPH VDIIGHPVGR
MLGSRDGAPV DIDALAYAAA EHRVLLEVNS GPHRLDLDGA AVRRALASGA VITINSDAHH
PDNLAWMRFG VVTARRGWAG AAQVANTWSD EALQEWLSRR
|
|---|
| |