Gene Xaut_4767 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_4767 
Symbol 
ID5421507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp5292966 
End bp5294060 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content68% 
IMG OID640884031 
ProductRluA family pseudouridine synthase 
Protein accessionYP_001419643 
Protein GI154248685 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.305838 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0012362 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCGTCG CGATGAAGAC CGTGGCCGAG GACGAGGCTG GCATGCGCCT CGACCGCTGG 
TTCAAGGTCC ATTTTCCTGA TCTCTCCTTC GGCCACCTGC AGAAGCTGGT GCGCACCGGG
CAAGTGCGCG TGGACGGGGG ACGGGTGAAG ACTTCGTCCC GCGTCGAGCC CGGCCAGAGC
GTGCGCATTC CCCCCCTGGG CGACGAGCCG CAGGACGAAC CGGCCGGAAA GCCGGGCGCC
GCGGGCAAGG CGTCCGAAGC GGGCCGGGTT TCCGCGGGGG GCGAGGCCTC GGGTACCACA
GAGGCGCCGG CCAAGCCGCG GCAATCCGCC AGCGCCGCCA AGCGCAAGGA GGACGAGGAC
CGCGCCTTCC TGAAATCCAT CACCCTGTTC GAGGACAAGG ACGTGATGGT GCTGAACAAG
CCCTACGGCC TCGCGGTGCA GGGCGGCTCG GGCACCTACC GGCATATGGA CGGCATCCTG
GAGGTGCTGC GCGACAAGGA CGGCCAGAAG CCGCGCCTCG TCCACCGCAT CGACAAGGAC
ACCTCCGGCT GCCTGCTGGT GGCCAAGACG CGGTTCGCCG CCTCGGTGCT GGCCAAGAGC
TTCCGCTCGC GGGAGGCGCG CAAGGTGTAT TGGGCGGTGG TGCCCGGCGT GCCCAAGCCC
AAGCAGGGGC GCATCTCCAC CTATCTCGCC CGCGACGAGG ACGAGGAGAA GATGCGGGTC
GCCCGCCATG GCGAGGACGA GGCGAGCCAC GCGATCACTT ATTATGCCGT AGTGGATCAG
GCGGCGCAGA AGATGAGCTG GCTGTCGCTG AAGCCGGTGA CAGGCCGCAC CCACCAGCTG
CGCGCGCACC TCGCCCATAT CGGCCACCCC ATCGTCGGCG ACCCCAAGTA TTTCGATATC
GAGAACTGGG AACTGCCGGG CGGCCTGCAG AACCGCCTGC ACCTTCTGGC GCGGCGGCTC
GTTATTCCCC ATCCGCGCGG GCAGGGGCTG ATCGACGTGT CGGCGCCGCT CCCCCACCAC
ATGGCGCAAT CCTTCGCCGT GCTGGGCTTC GACGCGTCAC AGTACGATCC CATCCTCGAG
GCGCCGGAGG GATGA
 
Protein sequence
MAVAMKTVAE DEAGMRLDRW FKVHFPDLSF GHLQKLVRTG QVRVDGGRVK TSSRVEPGQS 
VRIPPLGDEP QDEPAGKPGA AGKASEAGRV SAGGEASGTT EAPAKPRQSA SAAKRKEDED
RAFLKSITLF EDKDVMVLNK PYGLAVQGGS GTYRHMDGIL EVLRDKDGQK PRLVHRIDKD
TSGCLLVAKT RFAASVLAKS FRSREARKVY WAVVPGVPKP KQGRISTYLA RDEDEEKMRV
ARHGEDEASH AITYYAVVDQ AAQKMSWLSL KPVTGRTHQL RAHLAHIGHP IVGDPKYFDI
ENWELPGGLQ NRLHLLARRL VIPHPRGQGL IDVSAPLPHH MAQSFAVLGF DASQYDPILE
APEG