| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4615 |
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| Symbol | |
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| ID | 5421858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 5099765 |
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| End bp | 5102041 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640883879 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001419492 |
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| Protein GI | 154248534 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0613125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCCTCG CCAGCGTCCT GCTTCTGCTC GGGGGGATGG TCGCATACAG GCTGGTCCGG
AAACCGCGCG CGCGCGCAGA TGGGCGTGAA CCCGAATCCG GTAAACCCGC AACCTTCGTC
CCCGCCGCGG CCGCTGCCTC TCTGGCGGCC CCGCTCGTGT CCGGCGCGAC GGGCCCGGGA
CCTGCCAGCA GCGGCGACAG CATGGCCCTG CGGGAGAGCG AGGAACGCTT CGATCTGGCG
GCCAGGGGGT CGGACCAGGG GGTATTCGAC ATCCATGTGG GCCGCAGCCT GTATCTGTCG
CCCCGTGCCC GTGACATCCT CGGCATCGCC CCCAAAGCCC CCGTCGACAT ACGGCGGACC
TTTCGCCAGA TGCTGCGCGG CGCGGACCGC CGAAAGGTCG CCGCCGTCCG GAAGGATCTT
GTCCGCGGCG GCAGCGACGT CGATCTCGAC ATCCGGATTT CCCGGCCCGA CGGCGCCAGT
CGCGATGTGC GGTGGCGCGG CCTCGCCACC CGTGACGGCG ATGGCGCCGT GACCCGCGTG
GTGGGCATGA TCACGGATGT GACGGCGCAG AAGCAGAGCG AGCGCCACCT GCGCCTTGCC
GCCGCTGTGT TCGCCAGCGC CCACGACGGA CTGGTGGTGA CCGATCTCAA CGCGGTGGTT
TCCGCCGTAA ACCCGGCGTT TTCGCAGATC ACCGGCTATT GCGAGGCGGA GATCCTCGGC
CGGTCCATGC GCACCATGCA TTCCGGCCGT CACGACCGCG AATTCTATCG CGGCATGTGG
GGTGCTCTCA CCTCGACAGG CAGCTGGCAC GGCGAGATCT GGAACCGCCG CAAGAACGGC
GAGATCTTCC TCCAGCAGCT CAGCATCCGC ACCGTCTTTG ACGAGAAGGG CAAGCCGCAG
AACTATGTTG GCGCCTTCCA GGACATCACC CGGATCAAGC ATTCGGAATT CGAGCTCGAC
CGGATCGCCC ATTACGATCC CCTCACCGAC CTGCCCAACC GCACCCTGCT CGCATCCCTC
CTCGACCTTG CTGTCAGCCG GGCCGGCAAG ACCTGCGCCG TGCTGTTCCT GGACATCGAC
CGCTTCAAGA CCGTCAACGA CAGCCTCGGC CATATTGCCG GCGATGCGGT GCTCAAGGCG
GCGGCCGATC GCATCCGCGC CGCGCTTGAT GCCGATGCCA CGCTCGGGCA CTACGGCGCC
GACGAGTTTG TGGTGATCCT TGAGGAGATC GAGGGGCCGC AGGATGCGGC ACTCGCCGCA
TCGCGCCTCA TCGACGAACT GGCGCGGCCG TTCACGATCA ATGGCGGCGA GATCTATCTG
GGCGCCAGCG TGGGCATCAG CCTCCATCCG CTCGACGCCG ACGATGCCGC CCAGCTGCTC
CAGCATGCCA ACACAGCTCT GGCCGAGGCG AAGGCACAGG GGCGCGGGAT CTATTCTTTC
TACACCCAGG CACTCACCCG CAGCGCCCGG GTCCGCATGG AGATGGAAGC GGACCTCCGG
CGCGGCCTCG TGCGCGAGGA GTTCCGCCTG AACTTCCAGC CGGTGGTGGA CCTGGCCAAC
GGGCGCATCG CGGGCGCGGA GGCGCTGGTG CGCTGGCAGA GCCCGGTCCA TGGCCTTGTC
CTGCCCAACC GCTTTATTCC GCTCGCCGAG GAAACCGGCC TCATCGAGCC CCTGGGCGAC
TGGGTGCTGG AGGAGGCCTG CCAGCAGATG GCCAAATGGA CCGCTGCGGG GGCCGATCTC
GATTTCATCG CCGTGAACCT GTCGCCGCGG CAGTTTCAGC GTGGCACCCT CTGCGAGCGC
ATCGAAGAGG TGCTGCGCCG CACCGGCCTT CCCGCCGCGC GGCTGGAGGT GGAAATCACC
GAGAACGTGC TGTTCGGCGC TGTGGCGGCC GAACGCAAGC TGCGTGACAT GCGCGACAGC
GGCGTGCGCA TCGCGCTCGA CGATTTCGGC ACCGGCTATT CGTCACTGGC CTATCTCAAG
CGCTTTCCCA TTTCCAAGCT GAAGATCGAC CGCAGTTTCG TGCACGACCT GCCCCGCGCC
GCCGACGCGG AAATTGCCAC CGCCATCATC TCCATCGCCC GTGCGCTCGG GCTCGATGTG
GTGGCGGAGG GCATCGAGGC TCCCGAGCAA TGCGCCTTCC TGAAGGAGCG CGGATGCGGC
TTTGGGCAGG GCTATCTGTT TGGCCGCCCG GTAACCAGCG AACGCTTCCT GCGTCTTGCG
CTCCAGGGGC CGATCGCTAC CGCCATGGCC CATCCCGGCA GCCCGCGGCT CCACTGA
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| Protein sequence | MILASVLLLL GGMVAYRLVR KPRARADGRE PESGKPATFV PAAAAASLAA PLVSGATGPG
PASSGDSMAL RESEERFDLA ARGSDQGVFD IHVGRSLYLS PRARDILGIA PKAPVDIRRT
FRQMLRGADR RKVAAVRKDL VRGGSDVDLD IRISRPDGAS RDVRWRGLAT RDGDGAVTRV
VGMITDVTAQ KQSERHLRLA AAVFASAHDG LVVTDLNAVV SAVNPAFSQI TGYCEAEILG
RSMRTMHSGR HDREFYRGMW GALTSTGSWH GEIWNRRKNG EIFLQQLSIR TVFDEKGKPQ
NYVGAFQDIT RIKHSEFELD RIAHYDPLTD LPNRTLLASL LDLAVSRAGK TCAVLFLDID
RFKTVNDSLG HIAGDAVLKA AADRIRAALD ADATLGHYGA DEFVVILEEI EGPQDAALAA
SRLIDELARP FTINGGEIYL GASVGISLHP LDADDAAQLL QHANTALAEA KAQGRGIYSF
YTQALTRSAR VRMEMEADLR RGLVREEFRL NFQPVVDLAN GRIAGAEALV RWQSPVHGLV
LPNRFIPLAE ETGLIEPLGD WVLEEACQQM AKWTAAGADL DFIAVNLSPR QFQRGTLCER
IEEVLRRTGL PAARLEVEIT ENVLFGAVAA ERKLRDMRDS GVRIALDDFG TGYSSLAYLK
RFPISKLKID RSFVHDLPRA ADAEIATAII SIARALGLDV VAEGIEAPEQ CAFLKERGCG
FGQGYLFGRP VTSERFLRLA LQGPIATAMA HPGSPRLH
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