Gene Xaut_4615 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_4615 
Symbol 
ID5421858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp5099765 
End bp5102041 
Gene Length2277 bp 
Protein Length758 aa 
Translation table11 
GC content67% 
IMG OID640883879 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001419492 
Protein GI154248534 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0613125 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCCTCG CCAGCGTCCT GCTTCTGCTC GGGGGGATGG TCGCATACAG GCTGGTCCGG 
AAACCGCGCG CGCGCGCAGA TGGGCGTGAA CCCGAATCCG GTAAACCCGC AACCTTCGTC
CCCGCCGCGG CCGCTGCCTC TCTGGCGGCC CCGCTCGTGT CCGGCGCGAC GGGCCCGGGA
CCTGCCAGCA GCGGCGACAG CATGGCCCTG CGGGAGAGCG AGGAACGCTT CGATCTGGCG
GCCAGGGGGT CGGACCAGGG GGTATTCGAC ATCCATGTGG GCCGCAGCCT GTATCTGTCG
CCCCGTGCCC GTGACATCCT CGGCATCGCC CCCAAAGCCC CCGTCGACAT ACGGCGGACC
TTTCGCCAGA TGCTGCGCGG CGCGGACCGC CGAAAGGTCG CCGCCGTCCG GAAGGATCTT
GTCCGCGGCG GCAGCGACGT CGATCTCGAC ATCCGGATTT CCCGGCCCGA CGGCGCCAGT
CGCGATGTGC GGTGGCGCGG CCTCGCCACC CGTGACGGCG ATGGCGCCGT GACCCGCGTG
GTGGGCATGA TCACGGATGT GACGGCGCAG AAGCAGAGCG AGCGCCACCT GCGCCTTGCC
GCCGCTGTGT TCGCCAGCGC CCACGACGGA CTGGTGGTGA CCGATCTCAA CGCGGTGGTT
TCCGCCGTAA ACCCGGCGTT TTCGCAGATC ACCGGCTATT GCGAGGCGGA GATCCTCGGC
CGGTCCATGC GCACCATGCA TTCCGGCCGT CACGACCGCG AATTCTATCG CGGCATGTGG
GGTGCTCTCA CCTCGACAGG CAGCTGGCAC GGCGAGATCT GGAACCGCCG CAAGAACGGC
GAGATCTTCC TCCAGCAGCT CAGCATCCGC ACCGTCTTTG ACGAGAAGGG CAAGCCGCAG
AACTATGTTG GCGCCTTCCA GGACATCACC CGGATCAAGC ATTCGGAATT CGAGCTCGAC
CGGATCGCCC ATTACGATCC CCTCACCGAC CTGCCCAACC GCACCCTGCT CGCATCCCTC
CTCGACCTTG CTGTCAGCCG GGCCGGCAAG ACCTGCGCCG TGCTGTTCCT GGACATCGAC
CGCTTCAAGA CCGTCAACGA CAGCCTCGGC CATATTGCCG GCGATGCGGT GCTCAAGGCG
GCGGCCGATC GCATCCGCGC CGCGCTTGAT GCCGATGCCA CGCTCGGGCA CTACGGCGCC
GACGAGTTTG TGGTGATCCT TGAGGAGATC GAGGGGCCGC AGGATGCGGC ACTCGCCGCA
TCGCGCCTCA TCGACGAACT GGCGCGGCCG TTCACGATCA ATGGCGGCGA GATCTATCTG
GGCGCCAGCG TGGGCATCAG CCTCCATCCG CTCGACGCCG ACGATGCCGC CCAGCTGCTC
CAGCATGCCA ACACAGCTCT GGCCGAGGCG AAGGCACAGG GGCGCGGGAT CTATTCTTTC
TACACCCAGG CACTCACCCG CAGCGCCCGG GTCCGCATGG AGATGGAAGC GGACCTCCGG
CGCGGCCTCG TGCGCGAGGA GTTCCGCCTG AACTTCCAGC CGGTGGTGGA CCTGGCCAAC
GGGCGCATCG CGGGCGCGGA GGCGCTGGTG CGCTGGCAGA GCCCGGTCCA TGGCCTTGTC
CTGCCCAACC GCTTTATTCC GCTCGCCGAG GAAACCGGCC TCATCGAGCC CCTGGGCGAC
TGGGTGCTGG AGGAGGCCTG CCAGCAGATG GCCAAATGGA CCGCTGCGGG GGCCGATCTC
GATTTCATCG CCGTGAACCT GTCGCCGCGG CAGTTTCAGC GTGGCACCCT CTGCGAGCGC
ATCGAAGAGG TGCTGCGCCG CACCGGCCTT CCCGCCGCGC GGCTGGAGGT GGAAATCACC
GAGAACGTGC TGTTCGGCGC TGTGGCGGCC GAACGCAAGC TGCGTGACAT GCGCGACAGC
GGCGTGCGCA TCGCGCTCGA CGATTTCGGC ACCGGCTATT CGTCACTGGC CTATCTCAAG
CGCTTTCCCA TTTCCAAGCT GAAGATCGAC CGCAGTTTCG TGCACGACCT GCCCCGCGCC
GCCGACGCGG AAATTGCCAC CGCCATCATC TCCATCGCCC GTGCGCTCGG GCTCGATGTG
GTGGCGGAGG GCATCGAGGC TCCCGAGCAA TGCGCCTTCC TGAAGGAGCG CGGATGCGGC
TTTGGGCAGG GCTATCTGTT TGGCCGCCCG GTAACCAGCG AACGCTTCCT GCGTCTTGCG
CTCCAGGGGC CGATCGCTAC CGCCATGGCC CATCCCGGCA GCCCGCGGCT CCACTGA
 
Protein sequence
MILASVLLLL GGMVAYRLVR KPRARADGRE PESGKPATFV PAAAAASLAA PLVSGATGPG 
PASSGDSMAL RESEERFDLA ARGSDQGVFD IHVGRSLYLS PRARDILGIA PKAPVDIRRT
FRQMLRGADR RKVAAVRKDL VRGGSDVDLD IRISRPDGAS RDVRWRGLAT RDGDGAVTRV
VGMITDVTAQ KQSERHLRLA AAVFASAHDG LVVTDLNAVV SAVNPAFSQI TGYCEAEILG
RSMRTMHSGR HDREFYRGMW GALTSTGSWH GEIWNRRKNG EIFLQQLSIR TVFDEKGKPQ
NYVGAFQDIT RIKHSEFELD RIAHYDPLTD LPNRTLLASL LDLAVSRAGK TCAVLFLDID
RFKTVNDSLG HIAGDAVLKA AADRIRAALD ADATLGHYGA DEFVVILEEI EGPQDAALAA
SRLIDELARP FTINGGEIYL GASVGISLHP LDADDAAQLL QHANTALAEA KAQGRGIYSF
YTQALTRSAR VRMEMEADLR RGLVREEFRL NFQPVVDLAN GRIAGAEALV RWQSPVHGLV
LPNRFIPLAE ETGLIEPLGD WVLEEACQQM AKWTAAGADL DFIAVNLSPR QFQRGTLCER
IEEVLRRTGL PAARLEVEIT ENVLFGAVAA ERKLRDMRDS GVRIALDDFG TGYSSLAYLK
RFPISKLKID RSFVHDLPRA ADAEIATAII SIARALGLDV VAEGIEAPEQ CAFLKERGCG
FGQGYLFGRP VTSERFLRLA LQGPIATAMA HPGSPRLH