| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4309 |
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| Symbol | secD |
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| ID | 5423575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 4776095 |
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| End bp | 4777702 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640883570 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001419187 |
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| Protein GI | 154248229 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCACT TCTCCCGCCT CAAGACCACG GCGATCCTCC TCACCATCGC CGTGGGACTC
TTGTTCGCGC TGCCCAACGT CCTGCCCCAG AGCGCGCTGG CGCACCTGCC CTCGTGGCTG
GCCTCCAGCC GCGTGACGCT GGGCCTCGAC CTTCAGGGCG GCTCGCACAT CCTGCTCGAG
GTGGACGGTT CGGCGCTGCG CAAGGAACGC ACCGAGCAGG TGCGCGACGA GATCCGCCGC
GTCCTGCGTG ACCAGAAGAT CGGCTATTCC AACCTCGCGG TGCGCGACAC CTCGGTGAGC
CTGCGGCTGC GCGATCCCGC CGACACCCAG AAGGCGGTCG CCGAACTGCG CAAGCTGGCA
GTGCCGGTGA CCAACGCGCT GTTCGGCAAT TCGTCCGGCG AGTTGGATCT CCTGGTCTCC
TCCAGCTCCG ACGGCGCCGT GACGGTGCAG CTGAGCGAGG CCGGGCTCAA CGCCCGCATG
CGCTCGGCGG TGGAGCAGTC CATCGAGATC ATCCGCCGCC GTATCGACCA GCTCGGCACG
GTGGAACCCA ACATCCAGCG CCAGGGCCTC GACCGCATTC TGGTTCAGGT GCCCGGCCTT
CAGGACCCGC AGCGGCTGAA GAATCTGCTC GGCCAGACCG CCAAGCTCTC GTTCCGCATG
GTGGACCAGT CCATGTCGCC CCAGCAGGCG CTGGAAGGCC GCCCGCCGCC GGACTCCGAA
GTGCTGCAGG GTCAGGACGG CCAGCCCTAT CTGGTCGAGA AGCAGGTGCG CGTGTCCGGT
GAGGACCTGG TGGATGCCCA GCCGGGCTTC GACCACAATT CCCGCGAGCC CATCGTTTCC
TTCCGCTTCA ATAACAATGG CGCCCGGCGC TTCGCTGCCA CCACCCAGGA CGCGGTGGGC
CGGCCCTTCG CCATCGTGCT CGACAACCAG GTGATTTCCG CCCCGGTGAT CCGCGAGCCC
ATCCTCGGCG GCTCGGGGCA GATTTCCGGC TCCTTCACCG TGCAGCAGGC CAACGACCTC
GCCATCCTGC TGCGCGCCGG CGCGCTGCCG GCCCCGCTGA AGGTGGTGGA AGAGCGCACG
GTTGGCCCGA GCCTCGGCGC CGACTCGATC CATGCCGGCA AGGTCGCCGC CTATGTGGCG
ACGGCGCTGG TGGCGGTGTT CATGATCGCG GTCTACGGCC TGTTCGGCCT GTTCGCGCTG
GTGGCGCTTG CGGTTCACAT CATGCTGATG TTCTCGCTCC AGTCGATCCT GGGCGCGACG
CTGACCATGC CGGGCATCGC CGGCGTGGTG CTCACCATCG GCATGGCGGT GGATTCCAAC
GTCGTCATCT TCGAGCGCAT GCGCGACGAG GCGCGGGAAG GCCGGTCGGC CATTTCCGCC
ATCGACAAGG GGTTCGTGAA CGCGCTCGGC ACCATCCTCG ACGCCAACGT CACTTCGCTC
GCCACCGCCG TCATCCTGTT CCTCATGGGC GGGTCCGGCC CCGTGCGCGG GTTCGCGGTG
ACCTATATCC TCGGCCTTCT GACCACCATG TTCACTGCCT ATACCCTGAC GCGGCTGATG
ATCGCCTATT GGGTGAAGTG GCGGCGGCCG GCAAAGCTGC CCATCTGA
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| Protein sequence | MLHFSRLKTT AILLTIAVGL LFALPNVLPQ SALAHLPSWL ASSRVTLGLD LQGGSHILLE
VDGSALRKER TEQVRDEIRR VLRDQKIGYS NLAVRDTSVS LRLRDPADTQ KAVAELRKLA
VPVTNALFGN SSGELDLLVS SSSDGAVTVQ LSEAGLNARM RSAVEQSIEI IRRRIDQLGT
VEPNIQRQGL DRILVQVPGL QDPQRLKNLL GQTAKLSFRM VDQSMSPQQA LEGRPPPDSE
VLQGQDGQPY LVEKQVRVSG EDLVDAQPGF DHNSREPIVS FRFNNNGARR FAATTQDAVG
RPFAIVLDNQ VISAPVIREP ILGGSGQISG SFTVQQANDL AILLRAGALP APLKVVEERT
VGPSLGADSI HAGKVAAYVA TALVAVFMIA VYGLFGLFAL VALAVHIMLM FSLQSILGAT
LTMPGIAGVV LTIGMAVDSN VVIFERMRDE AREGRSAISA IDKGFVNALG TILDANVTSL
ATAVILFLMG GSGPVRGFAV TYILGLLTTM FTAYTLTRLM IAYWVKWRRP AKLPI
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