| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4046 |
|---|
| Symbol | |
|---|
| ID | 5424012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 4474858 |
|---|
| End bp | 4476864 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640883300 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001418925 |
|---|
| Protein GI | 154247967 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.19569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGG AGCAGGCCGC GCACATCGAT GAGCTGGTGC GCGCGGCGAG CGGGCACGGC
TCGCGCCGCG ATGCCATCAT CGAGGCGTCG TGGCGGCGCT GCGTCAACGA GCACAACCTC
GACCCGGTGG TGCTGCGCGA CCCGTGCATC GTTACCCATG CCCGCCTGCG CGAGCATCAG
GAGGCCATGG ACGAGTTCCT GCACACGGCG CGCTTCGGGG TGGAGACGCT TTATCGCGAG
GTGGCGGGCC TCGGCTACGT GCTGCTGCTC ACCGATGCCA AGGGCATCAC GGTGGATTTC
ATCGGCGATC CCACCTTCGA CAGCAACCTC ATGCGCGCCG GCCTCTATCT CGGCGCCGAC
TGGAACGAGC CGCATGCCGG CACCTGCGCG GTGGGCACCT GCATCGCCAC CGGCGAGGCG
CTGGTGGTGC ACCAGTCCGA CCATTTCGAC GCCACCCACA TCCCGCTGAC CTGCACGGCC
GCGCCGGTGT TCGACCCCAG CGGCGCGCTG GCGGCGGTGC TGGACATCTC GGCGCTGCAT
TCGCCGCAGC CCAAGGAGAG CCAGTATCTG GCGTTGCAGT TCGTCAAATC CGTCGCCCAC
AAGATCGAGA CGGCGCACCT TCTCAACCGC TTCCGCCGCG AATGGATCGT GAAGCTCGCG
CCCTCGCCGG AATTTGCCGA CGTGGACCCG GCCTATGTGC TGGCGGTGGA TGGATCGGGC
CGCATCCTCG GCTTCAACAA CCGCACCCGC CAGCTCATGA TGCGCGAGCT GGAGTGCCGC
CCCGCCCTGG CCGACGGGCG GCCGCTCGCC GGCCGACCCC TGTCCGAGTT CTTCGACCTC
CAGGTGGACG ACCTGCCGCG CCTCATGCCG TCGCGGCCGG CGTCGCAGCG CATGGTGCGC
CTCGCCCTCT CCGGCACGCC CTTGTTCGCG CAGGCCCAGC AGCCGCCGGC GCGTGTCGCC
TCGCCCTCGC CTCTTGCCCC CGCGCCGGTC CTGCCGAAGC CTTTGGAAGC CCTCACCTGC
GGCGATGGCG CCATGCTGGA GGTGGCGGCG CGGGCGGCCA AGCTCGTCAA CACCCAGATG
AGCCTGCTCA TCTGCGGCGA GACCGGCACC GGCAAGGAGC ATCTGGCCAA AGCCATCCAT
GCCGCGAGCG GTCGTGCCGG CAAGCCGTTC GTGCCGGTGA ACTGCGCAGC GCTGCCGGAG
ACGCTGATCG AGGGCGAATT GTTCGGCTAC GAGCCGGGCG CCTTCACCGG CGCCGCCGCC
AAGGGCAAGC GCGGCCTCGT CATGGAGGCG GACGGCGGCA CCCTCTTCCT CGACGAGATC
GGCGACATGC CGCTGACCCT CCAGACCCGC CTGTTGCGGG TGCTGGCCGA GCGCGAGGTG
ACGCCCATCG GCCGCACCCG TCCGGTGCCG GTGAACATCC GCGTCATCGC CGCCACCCAC
CGCGACCTCA TCGCCGAGGT GAAGGCCGGG CGCTTCCGCG AGGACCTCTA TTTCCGCCTC
AGCGGCGGCG TGCTCGCTTT GCCGGCCCTG CGCCAGCGCG CGGATCTCGA CTGGCTGGTG
GCGCGGTTTC TGGCCGAGCG GGGCGGGGTG CTGCGGGTGC CGTTCGAGCT GTCGGGCGAG
GCGCGGGCGG CGCTGCACGC CTATGCGTGG CCCGGCAACA TCCGCGAGCT GGCCAATGCG
CTGGACTATG CCTGCGCGGT GGCGGGCGAC GCCGTCATCG CCTGGGACGA CCTGCCCGAC
CGCATCCGCC ACGCGGCGCC GGTGGCGACT GGGCCGTGTG GGACGGCGCC TGTGGCGCTC
CTCGCCGGGT CTTCTGCCGT TGGCGGGATG GCGGCCGGTG GCACCAGTCC GGACGAGCGC
GGCGCCCTGC TGGCGCTTCT TGCCGCCCAG CGCTGGAACG TCTCGGCGGT GGCCCGCGCG
CTGGGCGTGG ACCGCACCAC CATCCACCGC CGCATGCGCC GCTTGGGGAT CACCTCGCCA
CGGCATGGGG ACGAGGGGGG CAACTGA
|
|---|
| Protein sequence | MKREQAAHID ELVRAASGHG SRRDAIIEAS WRRCVNEHNL DPVVLRDPCI VTHARLREHQ
EAMDEFLHTA RFGVETLYRE VAGLGYVLLL TDAKGITVDF IGDPTFDSNL MRAGLYLGAD
WNEPHAGTCA VGTCIATGEA LVVHQSDHFD ATHIPLTCTA APVFDPSGAL AAVLDISALH
SPQPKESQYL ALQFVKSVAH KIETAHLLNR FRREWIVKLA PSPEFADVDP AYVLAVDGSG
RILGFNNRTR QLMMRELECR PALADGRPLA GRPLSEFFDL QVDDLPRLMP SRPASQRMVR
LALSGTPLFA QAQQPPARVA SPSPLAPAPV LPKPLEALTC GDGAMLEVAA RAAKLVNTQM
SLLICGETGT GKEHLAKAIH AASGRAGKPF VPVNCAALPE TLIEGELFGY EPGAFTGAAA
KGKRGLVMEA DGGTLFLDEI GDMPLTLQTR LLRVLAEREV TPIGRTRPVP VNIRVIAATH
RDLIAEVKAG RFREDLYFRL SGGVLALPAL RQRADLDWLV ARFLAERGGV LRVPFELSGE
ARAALHAYAW PGNIRELANA LDYACAVAGD AVIAWDDLPD RIRHAAPVAT GPCGTAPVAL
LAGSSAVGGM AAGGTSPDER GALLALLAAQ RWNVSAVARA LGVDRTTIHR RMRRLGITSP
RHGDEGGN
|
|---|
| |