Gene Xaut_3992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_3992 
Symbol 
ID5423886 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp4421121 
End bp4422173 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content67% 
IMG OID640883247 
ProductP-type conjugative transfer protein TrbG 
Protein accessionYP_001418872 
Protein GI154247914 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02775] P-type conjugative transfer protein TrbG 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0363697 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.115635 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCCTG CCATCCGCAC ATCCGGGAGG CCGGCTTTCC GCGTCCTCTC CTTTCCGTCT 
TTCCGGAAGT CCGGCTTGCC ACTTCTCCTG CTTTGCACAT CGGCCCTGGC GGGCTGCGCC
ACCTTCGAGA AGCCCCCGGA GATCGAATAT GACGATGCCC CGCCCGCCGT CTTCAAGGCT
GAGCCGCCGG GGCCGGTGCG CATCGTTGAG CTGCCGAAGC CCTTGCCGCT GCCCGGCCAG
CTGAAGCCGG TGGGCAAGGA CGGCAAGGCC GAGCCCGAGT CCGCGGACCC GACGGCCCGA
GTGAACCAGG CCAATGCTGC CGCGCGCGTT CAGCCGGTGC GCAACGGCTT CATCAACTCC
ATGCAGGTCT ATCCCTTCGT GGATGGCGCG CTCTATCAGG TCTACGCTTC GCCCGGTCAG
ATCACCGACG TCGCCCTGCA ACCCGGCGAG CAACTGGTGG GCACGGGGCC GGTCGCTGCC
GGCGACACGG TGCGCTGGAT CATCGGCGAC ACCGAGAGCG GGGCGGGCGG GGCAAAGCAA
GTCCACATCC TGGTGAAACC GACACGGCCG GACCTCACCA CCAACCTCGT CATCAACACC
AATTTGCGCA CCTACCACAT GGAGCTGCGC TCCACCGAGA AGACCTACAT GGCCTCGGTC
TCCTGGCAAT ATCCCCAAGA CCAGCTCATC GCCCTCAGGC GCCAGAACGC GGAAGCGCAG
GCGGTGCAGC CCGTCGCCAC GGGCATCGAC CTGGCAAAGG TGAACTTCCG CTACGAGGTG
AGCGGCGACC GGGCACCGTG GCGGCCGCTG CGCGCCTTCG ATGATGGGCA GCAGGTCTTC
ATCGAGTTTC CCCGCGGGAT CGCCCATGGC GAGATGCCGC CGCTGTTCGT GGTCGGGCCG
CAAGGCGACA CCTCCGAACT CGTGAACTAT CGCGTGCGCG GCACCTATAT GATCGTGGAC
CGGCTCTTCG CAGCCGCCGA GCTGCGCTTC GGCGCCGACA AGGACCAGAA GCGCGTGCGC
ATCTCCCGCA CCGACGGGAG GCCGGTCCTA TGA
 
Protein sequence
MMPAIRTSGR PAFRVLSFPS FRKSGLPLLL LCTSALAGCA TFEKPPEIEY DDAPPAVFKA 
EPPGPVRIVE LPKPLPLPGQ LKPVGKDGKA EPESADPTAR VNQANAAARV QPVRNGFINS
MQVYPFVDGA LYQVYASPGQ ITDVALQPGE QLVGTGPVAA GDTVRWIIGD TESGAGGAKQ
VHILVKPTRP DLTTNLVINT NLRTYHMELR STEKTYMASV SWQYPQDQLI ALRRQNAEAQ
AVQPVATGID LAKVNFRYEV SGDRAPWRPL RAFDDGQQVF IEFPRGIAHG EMPPLFVVGP
QGDTSELVNY RVRGTYMIVD RLFAAAELRF GADKDQKRVR ISRTDGRPVL