| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3410 |
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| Symbol | |
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| ID | 5423606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 3799922 |
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| End bp | 3802267 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640882663 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001418296 |
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| Protein GI | 154247338 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.892203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTCC GCCGGTTGAT TGGCGCCTGT GTCTCAGCGC TCGCTGCCGG CATCCTTTCC
GCCGGGGTGA TCGCGCTGGC AGCCGAATTC TCCTCGCAGC GCCCGGGACA GGCGCTCGGG
CCCGGCGGGA TCGGCGCGTT GACAGACCAG GCGCCAACGG GCTTCGTCGG CTCCGCAGCC
TGCGCGGACT GCCATGGGGC ACAAACCCGC GCCTGGCTCT CCTCCCAGCA TGCCCATGCC
ATGGCCCGCG CCGAACCGCA GACGGTGCTT GGCAATTTCG ACGACGCCCG CGTCTCGCAC
CAGGGCAGTT CGGCGCGCTT CTTCCGCGAC GGATCGCGCT ACATGGTCGA GACCGAGGGC
GCCGACGGCA AGTCCGCCGC GTTCGAGATC ACCGATACGT TCGGCGTCCA CCCTCTGCAG
CAGTATCTCG TGACCTTTCC GGACGGGCGC CGCCAGGCAC TGCCGTTCGC CTATGACACC
CAGCCGGCCG CCGAGGGCGG ACAACGCTGG TTTCATCTTT ATCCGGACCA GATGATCGCA
TCCACGGACA TCCTGCACTG GACCGGGTTG CAGCAGAACT GGAACTTCAT GTGCGCCGAA
TGTCACTCGA CGGCGCTCCG CAAGAATTAT GATCCGGCTG CGAACCGCTT CGACACGCGC
TTCTCCGAGA TCAGCGTCGG CTGCGAGGCC TGTCACGGTC CGGCAGGGCG CCATGTGGAA
TGGGCCCGGG GCCCTCGCGA CCGCGAGGCG CCGAACAAGG GCTTTGCCTC GGTTGCCGCC
CTTCGCCCGC CGGCGGACTG GACCATCGAC CCGGCCACCG GCAGCCCGGC CCACGGCGTG
TCACGGCCTG CAGGCGATGT CGTGGAGACT TGCGCCCGCT GCCATGCCCG TCGCAGCATC
CTCTCGGAGG ACTGGCGCCC CGGCCAGCCC CTGACGCAGA CCCACCTGCC GACCTTCCTG
TCCGAAGGCC TGTTCGAGGC GGACGGCACC ATGCGGGATG AGGTCTTCAA CGACCATTCC
TTCAAGCAGA GCCTGATGTA TGCCCGGGGT GTCACCTGCG GCGACTGCCA CGAGCCGCAT
TCGGCCGCCC TGCGTGCGCC AGGCAGCGCG GTCTGCGCCC AATGCCACCT GCCGGAAAAG
TTCGCGTCCG AGGCACACAC GGGCCACGCG CCGGGACCGA AGGCTCCGGA TTGCATCTCC
TGCCACATGC CGGCGCGCAC CTACATGGTG GTGGACAAGA GGCACGACCA CTCCTTCCGC
ATTCCCCGCC CCGATGTTTC GGCGCAGCTC GGCATGCCGA ACGCCTGCAA CGACTGCCAC
AAGGACCAGT CGGCGAATTG GGCGGCCGAG GCCATCGCGC GCTGGCATGG GCCCGAGCGC
AAGGGCTTCC AGGATTGGGC CGCGGCGCTC CACGACGCGC GCGGCGGCGA TCCCGCGGCC
CGCGAGGCGC TGATCCGGCT CGCCACGACG CCGGCGACGC CCGCCATCGT TCGCGCCACG
GCGGTGAACG AGCTGCGGGG CTTCCCCTCC ATCGCGACCG ACGCTGCGAT GCAGAAGGCG
CTGTCCGATC CCGATCCGCT GGTGCGCATC GCTGCCGTGG AGAGCGCCGC CGGACTGCCC
CTCGAGACGC GCTGGCGGCG GCTCGCGCCG CTGCTGATCG ATCCGGTTGC CGGCGTCCGC
ATCGAGGCGG CGAACCAGCT TGCGGACCAG CCGCTGGCGG CGCTTTCAGC CGCCGACCGG
GACCGGCTCA GCACAGCGTT CAGGGAATAT GAGGCGGCGC AGCGCCTCAA CGCGGACCGG
CCGGAGGCGC GCTCCAATCT GGGCGGTTTT CTGCTGCGCC GTGGCGACGT GGCGGGGGCC
GAGGCCCAGT ACCGCGCCGG CCTGAAGCTT CAGCCGGACT TGCCGGCGCT CGCGGTCAAT
CTCGCCGATC TCTACCGCCT GACGGGCCGC GAGCGCGAGG CGCAGGATGT CCTGGAGCGG
GCGATCAAGG CCAATCCCGA TGCAGCGGCG CCAAGGCATG CGCTGGGGCT CGCGCTCATC
CGCCAGAAGC GCTATGGCGA GGCCCTGAAC GAGCTGAAGC GCGCCTATGA GCTGGCGCCG
GACAACGCCC GCTATGCCTA TGTCTACGCG GTGGCGCTTC AGTCCCTCGG GCGCGCGCAG
GACAGCGCCG CAGTGACCCG CGATGCCCTA GCTCGCGTCC CCAATGATGT CGACCTGCTA
TCCCTGCAGC TGAACGAAGC CCTGCGCGCC GGCGATGTCG ATCGCGCGCG GGAAGCCGTT
TCGAAGCTCA CGCTTCTGCG GCCGGATGAC ACCGAGATTG CGCGCCTGAA TGCGCGCCTG
CGCTGA
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| Protein sequence | MSFRRLIGAC VSALAAGILS AGVIALAAEF SSQRPGQALG PGGIGALTDQ APTGFVGSAA
CADCHGAQTR AWLSSQHAHA MARAEPQTVL GNFDDARVSH QGSSARFFRD GSRYMVETEG
ADGKSAAFEI TDTFGVHPLQ QYLVTFPDGR RQALPFAYDT QPAAEGGQRW FHLYPDQMIA
STDILHWTGL QQNWNFMCAE CHSTALRKNY DPAANRFDTR FSEISVGCEA CHGPAGRHVE
WARGPRDREA PNKGFASVAA LRPPADWTID PATGSPAHGV SRPAGDVVET CARCHARRSI
LSEDWRPGQP LTQTHLPTFL SEGLFEADGT MRDEVFNDHS FKQSLMYARG VTCGDCHEPH
SAALRAPGSA VCAQCHLPEK FASEAHTGHA PGPKAPDCIS CHMPARTYMV VDKRHDHSFR
IPRPDVSAQL GMPNACNDCH KDQSANWAAE AIARWHGPER KGFQDWAAAL HDARGGDPAA
REALIRLATT PATPAIVRAT AVNELRGFPS IATDAAMQKA LSDPDPLVRI AAVESAAGLP
LETRWRRLAP LLIDPVAGVR IEAANQLADQ PLAALSAADR DRLSTAFREY EAAQRLNADR
PEARSNLGGF LLRRGDVAGA EAQYRAGLKL QPDLPALAVN LADLYRLTGR EREAQDVLER
AIKANPDAAA PRHALGLALI RQKRYGEALN ELKRAYELAP DNARYAYVYA VALQSLGRAQ
DSAAVTRDAL ARVPNDVDLL SLQLNEALRA GDVDRAREAV SKLTLLRPDD TEIARLNARL
R
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