| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3364 |
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| Symbol | rpoB |
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| ID | 5423193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 3743884 |
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| End bp | 3747960 |
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| Gene Length | 4077 bp |
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| Protein Length | 1358 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640882617 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001418250 |
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| Protein GI | 154247292 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.209145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAA CGTTCACCGG TCGTAAGCGG ATCCGCAAGT TCTTCGGCAA GATCAAGGAA
GTGGCCGAGA TGCCGAACCT CATCGAGGTT CAGAAGGCAT CCTACGACCA GTTCCTCCAG
ATCGAGGAAC CCAAGGGCGG ACGCGACGAC GACGGCCTGC AGGCGGTGTT CAAGTCGGTG
TTCCCCATCT CCGACTTCTC CGGCGCCTCC ATGCTGGAGT TCGTGCGCTA CGAGTTCGAG
CCCCCCAAGT ATGACGTGGA CGAGTGCCGC CAGCGCGGCA TGACCTTTGC TGCCCCGCTC
AAGGTGACCC TGCGCCTCAT CGTGTTCGAT GTGGATCCCG AAACCGGCGC CAAGTCGGTG
AAGGACATCA AGGAGCAGGA CGTCTACACC GGCGACATCC CGCTCATGAC CATGAACGGC
ACGTTCATCG TGAACGGCAC CGAGCGCGTC ATCGTCTCCC AGATGCACCG TTCGCCGGGC
GTGTTCTTCG ACCACGACAA GGGCAAGACC CACTCCTCGG GCAAGCTCCT GTTCGCCGCC
CGCATCATTC CCTATCGCGG CTCCTGGCTC GACATCGAGT TCGACGCCAA GGACATCGTG
TTCGCCCGCA TCGACCGGCG CCGGAAGATC CCGGTGACGA GCCTGCTCTA TGCCCTCGGC
CTCGACAACG AGGAGATCCT CTCGACCTTC TACGAGAAGA TCCCCTTCAC GCGGGAGAAG
GGCGGCTGGC GCATGCCGTT CGATCCCAAG CGCATGAAGG GCTACAAGGC GGTCGCCGAC
CTGATCGACG CCGACACCGG CGAAGTCGTG CTCGAGGCCG GCAAGAAGCT GACCGTCCGC
GCCGGCCGCC AGCTGGCCGA GAAGGGCCTC AAGGCCCTCA AGATCTCCGA CGAGGAGATG
ATCGGCCAGT ACATCGCCGA GGACCTGGTG GATCTCACCT CGGGCGAGAT CCACGCCGAG
GCGGGCGAGG AAATCACCGA GAAGACGCTG AAGCTGCTCG AAGAGACCGG CTACAACGAA
ATCCCGGTGC TGGACATCGA CCACGTCAAC ACCGGCGCCT ACATCCGCAA CACGCTGACC
GCCGACAAGA ACGTGACCCG CGAGGACGCG CTCTTCGACA TCTACCGCGT GATGCGCCCG
GGCGAGCCGC CGACGCTGGA TTCGGCGCAG GCCATGTTCC ACTCGCTGTT CTTCGACAGC
GAGCGCTACG ACCTGTCCGC GGTCGGCCGC GTGAAGATGA ACATGCGCCT CGACCTCGAC
TGCCCCGACA CGGTGCGGGT GCTGCGCCGC GACGACATCC TCTCGGTCAT CCGCACGCTG
GTTGAGCTGC GCGACGGCAA GGGCGAGATC GACGACATCG ACCACCTGGG CAACCGCCGC
GTGCGCTCGG TGGGCGAGCT CATGGAGAAC CAGTACCGCG TCGGCCTGCT GCGCATGGAG
CGCGCCATCA AGGAACGCAT GTCCTCCGTG GACATCGACA CCGTGATGCC GCAGGACCTC
ATCAACGCCA AGCCGGTGGC GGCGGCGGTG CGCGAGTTCT TCGGCTCGTC CCAGCTCTCG
CAGTTCATGG ACCAGACCAA CCCGCTTTCC GAGATCACGC ACAAGCGGCG TCTCTCGGCG
CTTGGCCCGG GCGGTCTGAC CCGTGAGCGC GCCGGCTTCG AGGTGCGCGA CGTGCACCCG
ACCCACTACG GCCGCATCTG CCCCATCGAG ACGCCGGAAG GCCCGAACAT CGGCCTCATC
AACTCGCTGG CCACCTTCGC CCGCGTGAAC AAGTACGGCT TCATCGAGGC GCCTTACCGC
CGCGTGGTGG ATTCGAAGGT CACCGACGAG GTGGTCTATC TCTCCGCCAT GGAGGAGGGG
AAGTATTACG TCGCGCAGGC CAACATCCCG CTCGACAAGG ACGGCCGCTT CGAGGAAGAC
CTCATCGTCT GCCGCCATGC GGGCGACGTG CTCCTGGTCG CCCCCGACCG CGTCGACTTC
ATGGACGTGT CCCCCAAGCA GCTGGTCTCG GTGGCCGCGG CGCTGATCCC GTTCCTTGAG
AACGACGACG CCAACCGCGC GCTCATGGGC TCCAACATGC AGCGCCAGGC GGTGCCGCTG
GTGCGCTCGC AGGCGCCGCT GGTGGGCACC GGCATGGAAG CCGTGGTGGC CCGGGATTCG
GGCGCCGCCA TCGCCGCCCG CCGCACCGGC GTGATCGACC AGGTGGACGC CACCCGTATC
GTCATCCGCG CCACGGAAGA GGCCGATCCG TCCAAGTCGG GCGTCGACAT CTACCGGCTG
ATGAAGTTCC AGCGCTCCAA CCAGTCCACC TGCATCAACC AGCGTCCGCT GGTGCGCGTG
GGTGACCAGG TGAAGAAGGG CGACATCATC GCCGACGGTC CCTCGACCGA GCTCGGCGAA
CTGGCGCTCG GCCGGAACGT GCTCGTCGCG TTCATGCCGT GGAACGGCTA CAACTTCGAA
GATTCGATCC TGCTCTCGGA GAACATCGCC AAGGAGGACG TGTTCACCTC GATCCACATC
GAGGAATTCG AGGCCATGGC CCGTGACACC AAGCTCGGGC CGGAGGAAAT CACCCGCGAC
ATTCCCAACG TCTCGGAAGA GGCGCTGAAG AATCTCGACG AGGCGGGCAT CGTCTATATC
GGCGCGGAAG TGCGCGCCGG CGACATCCTC GTGGGCAAGA TCACGCCCAA GGGCGAAAGC
CCGATGACGC CGGAAGAAAA GCTGCTGCGC GCCATCTTCG GCGAGAAGGC CGCCGACGTG
CGCGACACCT CGCTGCGCCT GCCGCCCGGC ACCACCGGCA CCATCGTGGA AGTGCGCGTG
TTCAACCGCC ACGGCGTGGA CAAGGACGAG CGTGCCCTGG CCATCGAGCG GGAAGAGATC
GAGCGTCTCG CCAAGGACCG TGACGACGAG CAGGCGATCC TGGATCGTAA CGTCTACGGC
CGCCTGATCG AGATCCTCGA CGGCAAGACC GCCATCGCCG GCCCGAAGGG CTTCCGGAAG
GAGACCGTGG TCACCCGCGA GATCCTCACC GAATACCCGC GCTCGCAGTG GTGGCTGTTC
GCGGTGGCCG ACGACGCCAT CATGGCGGAG CTGGAAGCCA TCCGCGCCCA GTATGACGAC
TCTAAGAAGC GTCTGGAGCA GCGGTTCCTC GACAAGGTCG AGAAGCTGCA GCGCGGCGAC
GAACTGCCCC CCGGCGTGAT GAAGATGGTC AAGGTCTTCG TCGCGGTGAA GCGCAAGATC
CAGCCCGGCG ACAAGATGGC CGGCCGCCAT GGCAACAAGG GCGTGGTCTC GCGCATCGTG
CCCGTGGAGG ACATGCCGTT CCTCGAGGAC GGCACCAACG TGGACATCGT GCTGAACCCG
CTGGGCGTGC CCTCGCGCAT GAACGTCGGG CAGATCCTGG AGACGCACCT GGGCTGGGCC
TGCGCGGGCC TCGGCCGGCA GGTGGCCGCG GCGATGGAAG CCTATTACGG CAAGCAGGAC
CTCAAGCCCC TGCGCGATCG CCTTGAGACC ATCTACGGCA AGGACGAGAT CGAGCAGCTC
AAGGACGGTG AACTGCCCGA GCTGGGCGAG AACCTGCGCA AGGGCGTGCC CATGGCCACC
CCGGTGTTCG ACGGGGCGCA CGAGGCCGAC ATCGAGCAGC AGCTGGAAAA GGCGGGCCTT
GATGCCTCCG GCCAGTCCAC GCTCTATGAC GGGCGCACCG GCGAGCCGTT CGATCGTAAG
GTCACGGTGG GCTACATCTA CATGCTGAAG CTCCACCATC TGGTCGACGA CAAGATCCAC
GCCCGCTCCA TCGGCCCCTA CTCGCTGGTC ACCCAGCAGC CCCTGGGCGG CAAGGCGCAG
TTCGGCGGCC AGCGCTTCGG CGAAATGGAA GTGTGGGCGC TCGAAGCCTA CGGCGCGGCC
TACACCCTGC AGGAGATGCT GACGGTGAAG TCCGACGACG TGGCCGGCCG CACCAAGGTC
TACGAGGCCA TCGTGCGCGG CGAGGACACG TTCGAGAGCG GCATTCCCGA GAGCTTCAAC
GTGCTCGTGA AGGAAATGCG CTCCCTCGGC CTCAACGTCG ACCTCGAGAA CAGCTGA
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| Protein sequence | MAQTFTGRKR IRKFFGKIKE VAEMPNLIEV QKASYDQFLQ IEEPKGGRDD DGLQAVFKSV
FPISDFSGAS MLEFVRYEFE PPKYDVDECR QRGMTFAAPL KVTLRLIVFD VDPETGAKSV
KDIKEQDVYT GDIPLMTMNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA
RIIPYRGSWL DIEFDAKDIV FARIDRRRKI PVTSLLYALG LDNEEILSTF YEKIPFTREK
GGWRMPFDPK RMKGYKAVAD LIDADTGEVV LEAGKKLTVR AGRQLAEKGL KALKISDEEM
IGQYIAEDLV DLTSGEIHAE AGEEITEKTL KLLEETGYNE IPVLDIDHVN TGAYIRNTLT
ADKNVTREDA LFDIYRVMRP GEPPTLDSAQ AMFHSLFFDS ERYDLSAVGR VKMNMRLDLD
CPDTVRVLRR DDILSVIRTL VELRDGKGEI DDIDHLGNRR VRSVGELMEN QYRVGLLRME
RAIKERMSSV DIDTVMPQDL INAKPVAAAV REFFGSSQLS QFMDQTNPLS EITHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIEAPYR
RVVDSKVTDE VVYLSAMEEG KYYVAQANIP LDKDGRFEED LIVCRHAGDV LLVAPDRVDF
MDVSPKQLVS VAAALIPFLE NDDANRALMG SNMQRQAVPL VRSQAPLVGT GMEAVVARDS
GAAIAARRTG VIDQVDATRI VIRATEEADP SKSGVDIYRL MKFQRSNQST CINQRPLVRV
GDQVKKGDII ADGPSTELGE LALGRNVLVA FMPWNGYNFE DSILLSENIA KEDVFTSIHI
EEFEAMARDT KLGPEEITRD IPNVSEEALK NLDEAGIVYI GAEVRAGDIL VGKITPKGES
PMTPEEKLLR AIFGEKAADV RDTSLRLPPG TTGTIVEVRV FNRHGVDKDE RALAIEREEI
ERLAKDRDDE QAILDRNVYG RLIEILDGKT AIAGPKGFRK ETVVTREILT EYPRSQWWLF
AVADDAIMAE LEAIRAQYDD SKKRLEQRFL DKVEKLQRGD ELPPGVMKMV KVFVAVKRKI
QPGDKMAGRH GNKGVVSRIV PVEDMPFLED GTNVDIVLNP LGVPSRMNVG QILETHLGWA
CAGLGRQVAA AMEAYYGKQD LKPLRDRLET IYGKDEIEQL KDGELPELGE NLRKGVPMAT
PVFDGAHEAD IEQQLEKAGL DASGQSTLYD GRTGEPFDRK VTVGYIYMLK LHHLVDDKIH
ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVAGRTKV
YEAIVRGEDT FESGIPESFN VLVKEMRSLG LNVDLENS
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