| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3047 |
|---|
| Symbol | |
|---|
| ID | 5424747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 3384604 |
|---|
| End bp | 3386400 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640882293 |
|---|
| Product | ATP-dependent endonuclease family protein |
|---|
| Protein accession | YP_001417934 |
|---|
| Protein GI | 154246976 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.300622 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.13978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGATAT TCTCGGTAGG GATCGAAAAT TTTCGCGGCA TCCAGTCGGC CAAACTGGTG
CTGCCTGATC ACGCCGTACT GATCGGCGAC AACAATACCG GCAAATCGTC GGTATTCGAA
GCGATCGATC TCGCCTTGGG GCCGGACCGG CTGAGCCGGC GACCCCCCGT GGATGAGCAT
GATTTCTATC AGGGGCGCTA TCTTCCTAGC CCAAACCCCG ATGCTCCCGA GGGCGCGGAG
CCCGGCCCCG CGCCGAAAAT CACGGTCGAG GTGACGATCA CCAATCTGTC GCCGGAGCAG
GAGGCACGAT TTGGAGCCAA CGTCGAGTGG CTGAATACTA CTACCGGAGA CTTCTATCAG
GAGGCCAACC CGGCTGGGGT CGATGCTGCC GAGATCAAGG CGGCGCTGCG CGTCACATTC
GTCGGCCAAT ACGATCCCGA TGAGGATGAC TTCGTCGGCA ACAGCTATTT CACGCGCAGC
CTTTCAGAGG ATGAGACACC TGCATCGTTC TCGAAGAAGG ACAAGCAGCA CTGCGGATTT
CTTTTCCTGC GGTCGTTGAG GACAGGATCT CGGGCGCTCA GCTTGGAACA CGGCAGCCTG
CTGGACATCA TCCTCCGGCT GAAGGAAATC CGGCCGCAGA TGTGGGAAGG GACGATCGGA
ACGCTCGCAG CCTTCGATGT CGCGAGCGAC CCGTCCATTG GCATCTCAGG CGTGCTCGAG
AGCATCGACA AGTCGCTGAA GAAATACGTC CCGCGCGAAT GGGGAGTGAA GCCGCACCTA
AAGGTGTCGA ACCTGACGCG CGAGCATTTG CGCAAGGTCA TCACCGCGTT CATCGCCACG
GGTGCGGGCG ATCATGCCGC TCCCTTCTTT CGGCAGGGAA CAGGGACGAT CAACATGTTG
GTGCTCGCGA TGCTGTCACA GATCGCCGAG GACAAGCAGA ACGTCATTTT TGCGATGGAG
GAAGCCGAAA CGGCGATTCC GCCATACGCG CAGAAGCGGA TTGTCCATGA GCTTCGCAAG
CTGTCGGCGC AGTCGATCTT CACGTCGCAC TCGCCGTATG TGCTCGAAGA ATTCAGCCTC
GACGAAACCG TCATCCTCTC GCGATCGGAC AATGGCCAAC TGAGCCAATC CAAAATCGAG
TTGCCTGAGA GCATCAAGCA CAAGCGTTAT CGGCAGGATT TCCGAACCCG ATTTTGCGAG
GGGCTTCTTT CGCGCCGAGT TCTCATCGCC GAAGGCGCTA CGGAGGCGAC CTCCTTCCCG
GTCGTCGCGC GGCGACTGGC CGAGCTCAAC CCGGCTGCTT ATGCGTCTTT GGAAGCCTTG
GGCGTCTGCG TGATCGACGC CGGAAGCGAG ACCCAGATCG CCGACCTTGG AGCGCTGTAC
AAAAGTCTTG GGAAACGGAC CTTTGCGTTA TGCGACAAGC AGACGGATGC CGCCAAGGTG
GCCATAGAAG CCCAGGTGGA ACGCCTGTTC ATGCACGACG AGAAGGGTAT TGAGGATCTG
ATCCTCAAGA ACACCACCCA AGCGGCCCTG GAGCGGTTTG CCGATCAGCT CGATTGGCCA
CAGCATCTGC TCGCGAAATA CCCCGACCCA AAAGCTCAGG CTGCTGCCGC GCTCGGGGCC
TATTTCAGCT GGTCGAAAGG CAATTGGGGA ATCGCTGAGT TCTTGGCACA GTGTTCCGAA
GCTGAGATCC CGCAGTGGCT ACGGGATGCC TGCGTCACCC TGAAGGCACT GTGTGATCCG
CCTCTACAGC CAGCCGAGCC CGAACCCGAA GACGATTTTG CTGACCTGTT AGGATAG
|
|---|
| Protein sequence | MKIFSVGIEN FRGIQSAKLV LPDHAVLIGD NNTGKSSVFE AIDLALGPDR LSRRPPVDEH
DFYQGRYLPS PNPDAPEGAE PGPAPKITVE VTITNLSPEQ EARFGANVEW LNTTTGDFYQ
EANPAGVDAA EIKAALRVTF VGQYDPDEDD FVGNSYFTRS LSEDETPASF SKKDKQHCGF
LFLRSLRTGS RALSLEHGSL LDIILRLKEI RPQMWEGTIG TLAAFDVASD PSIGISGVLE
SIDKSLKKYV PREWGVKPHL KVSNLTREHL RKVITAFIAT GAGDHAAPFF RQGTGTINML
VLAMLSQIAE DKQNVIFAME EAETAIPPYA QKRIVHELRK LSAQSIFTSH SPYVLEEFSL
DETVILSRSD NGQLSQSKIE LPESIKHKRY RQDFRTRFCE GLLSRRVLIA EGATEATSFP
VVARRLAELN PAAYASLEAL GVCVIDAGSE TQIADLGALY KSLGKRTFAL CDKQTDAAKV
AIEAQVERLF MHDEKGIEDL ILKNTTQAAL ERFADQLDWP QHLLAKYPDP KAQAAAALGA
YFSWSKGNWG IAEFLAQCSE AEIPQWLRDA CVTLKALCDP PLQPAEPEPE DDFADLLG
|
|---|
| |