| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2995 |
|---|
| Symbol | |
|---|
| ID | 5423731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 3333207 |
|---|
| End bp | 3334463 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640882241 |
|---|
| Product | conjugation TrbI family protein |
|---|
| Protein accession | YP_001417882 |
|---|
| Protein GI | 154246924 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.674957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGACG AACGCGGTCC CGAAAAGGAC GAAGGACAGG CGCTCGATAG GGCGCCGAGG
CCGGAGGCGG CAGACGAAAA TGACAGTCAG CCGCTCAAGG GCGACCCGGC CGCGCCGATG
CGGCTGCGGC CCGAACCGCC GCGCGTCACC CGCCTGTCGC GCAAGGTGCT GGCCGGTCTC
GGCCTGGTCG CCAGCCTCGG CGTCGGCGGA GCGCTGGTCT ATGCGCTCCA GACACGCAAC
GGCGGCAATC AGGGGCAGGA ACTCTATTCC ACCGACAACC GCACCACGCC GGACGGCCTG
AACGGTCTGC CGAGGGACTA TACCGCGGTT CCGAGACTCG GCCCGCCGCT CCCCGGCGAT
CTCGGCCGAC CGATCCTCAA CGCGCAGAAC GGCGGCCAAC TGGTTCCGAC ACCCGGCATA
GCAAACCCGG CGCCCGCCGG CCCCAGCCCG GAGGAACAGC GCCGGGCACA GGAACTGGAG
GCGGCGCGCA CTGCACGTCT GTTTTCAACC ACGGAGACAA GACCCGCCAG CACGCCGACG
GCGGCGCCGG CAGCCACACC CGCCACAGAC CTCACCAGCC TCGGCCTCGC ACCACAGCCG
GCGACGCCTT CGGCACAGGA CCGCCAGCTC GCGTTCCTCA ACCAGACGCC CGACAAGCGT
ACCGTCTCGC CCGATCGGAT CGCGGCCCCC GCATCGGCCA ATGTCCTTCA GGCCGGCGCG
GTGATCTCGG CGGCGCTCAT CACCGGCATC CGCTCCGACC TTCCCGGCCA GATCACCGCG
CAGGTGACGG AAAACATTTA CGACAGCCCG ACCGGGCGCA TCCTGCTGAT CCCACAGGGC
ACGCGCGTCA TCGGGCAATA TGACAGCGGC GTCGGCTTCG GCCAGCGCCG CATCCTGCTG
GTCTGGAACC GGCTGATCTT CCCGAACGGC CGCAGCATCG TTCTCGAGCG CCAGCCAGGC
GCAGACGCCG AAGGCTATGC CGGGCTTGAG GATGGCGTCG ATTACCATTG GAGTGAACTG
TTCAAGGCCG CAGCGCTGTC GACCTTGCTC AGCGTCGGCG CCGAGGCGGG CTCATCCGGG
CAGGAAAGCG ACATCGTGCG CGCTCTGCGC AACGGCGCCT CTGACAGCAT CAGCCAGACC
GGCCAACAGA TCGTCCAGCG CCAGCTCAAC ATCGCGCCGA CACTCACTAT CCGGCCCGGC
TTTCCTGTCC GCGTCATCGT TACGCGCGAC CTGGTGCTCG AACCCTACAG AGGCTGA
|
|---|
| Protein sequence | MNDERGPEKD EGQALDRAPR PEAADENDSQ PLKGDPAAPM RLRPEPPRVT RLSRKVLAGL
GLVASLGVGG ALVYALQTRN GGNQGQELYS TDNRTTPDGL NGLPRDYTAV PRLGPPLPGD
LGRPILNAQN GGQLVPTPGI ANPAPAGPSP EEQRRAQELE AARTARLFST TETRPASTPT
AAPAATPATD LTSLGLAPQP ATPSAQDRQL AFLNQTPDKR TVSPDRIAAP ASANVLQAGA
VISAALITGI RSDLPGQITA QVTENIYDSP TGRILLIPQG TRVIGQYDSG VGFGQRRILL
VWNRLIFPNG RSIVLERQPG ADAEGYAGLE DGVDYHWSEL FKAAALSTLL SVGAEAGSSG
QESDIVRALR NGASDSISQT GQQIVQRQLN IAPTLTIRPG FPVRVIVTRD LVLEPYRG
|
|---|
| |