| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2653 |
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| Symbol | |
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| ID | 5422681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | - |
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| Start bp | 2945655 |
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| End bp | 2948585 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640881907 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_001417551 |
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| Protein GI | 154246593 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCT TTCATCTTCA CGTCAAGGTC ATCGGCCGCA AGTCCGGCTC CAGCGCGGTG
GCCTCCGCCG CCTACCGCTC GGCCTCGCGG TTGCGCGACG ACCGGCTTGA GCGAAGCCAT
GACTTCTCCA ACAAGCGCGG CGTCATCCAT TCCGAGGTCA TGCTGCCGGA AGATGCGCCC
GAACAATGGC GCGACCGCGA GCGGCTTTGG AACGATGTCG AGGCGTTCGA GGTCAGGAAG
GACGCCCAGC TTGCCCGCGA GGTGGAGTTC GCCTTGCCAC GCGAGATGAC GCAAGCACAG
GGCATCGAAC TGGCCCGCGA CTTCGTGCAG TCCGAATTTG TCGATCAGGG CATGATCGCC
GACCTCAATG TGCATTGGGA CATGGCCGAG GATGGGACGG CCAAGCCTCA CGCCCATGTC
ATGCTGAACA TGCGATCCGT GGACGAGGAC GGCTTCGGCC CGAAGGTGCG GGAGTGGAAC
CGCACCGAGA TGGTCGAGCG TTGGCGCGAA CGCTGGGCCG AACTGGCCAA CGAGCGGCTG
GCCGAACTCG ACATCGACGC GCGCATCGAC CATCGCAGCC TTGAGGCGCA GGGCATCGCG
CTGGAGCCGC AAAGCCAGAT CGGCGCGCCC GCGCAACGGA TCGAAGGCGA AGGGATCGAG
GCCGCCGACC GCGCGGAAAT GCACCGCGAG ATCGCGCACA ACAACGGCGC CCGCATCATC
GCCGATCCTT CCATCGCGCT GGACGCCATC ACGCACCAGC AATCCACCTT CACGCGGCGC
GACATGGCGA TGTTCGCGCA CCGGCACAGT GACGGGATCG ACCAGTTCAA CGAGGTCATG
GGCGCGATGC GTGGCGCTCC CGATCTGGTC GAACTTGGCA GGGACGAACG GGGCGAGGAC
CGCTTCACCA CCCGCGACAT GATCGAGACC GAACAGCGCC TGCACCGCGC CGCCGAAGTC
ATGGCGGAGA AGGAGCGCCA TGAGGTCGGC GACAGAGACC GCGAAACGGC GCTGGCGCGT
GCGGAAGCGC GCGGCCTTGT CCTTTCGGGA GAGCAGGCCG AGGCGCTGGC GCATATCACG
GACGGGCGCG ATCTGGGCGT TGTGGTCGGT TATGCCGGGA CGGGGAAGAG CGCGATGCTG
GGCGTGGCGC GCGAAGCCTG GGAAGCGGCT GGCTATGAAG TCCGGGGCGT GGCGCTGTCC
GGCATCGCCG CCGAGAATCT GGAAAGCGGA TCGGGCATCG CATCACGCAC CATCGCCAGC
TTGGAACATG GTTGGGGACA GGGCCGCGAC GTGCTCACTT CCCGCGATGT GCTTGTCATC
GACGAGGCGG GCATGGTCGG CACGCGCCAG TTGGAGCGCG TGCTGTCCCA TGCCGCCGAG
GCTGGCGCCA AGGTGGTGCT GGTCGGCGAT CCCCAGCAGT TGCAATCCAT CGAGGCCGGC
GCGGCGTTCC GCTCGATCTT CGAGCGCCAC GGCGGGGCGG AGATCGGCGA GGTGCGCCGC
CAGCGGGAGG ACTGGCAGCG CGACGCCACG CGCGATCTGG CGACCGGCCG AACCGGCGAT
GCGATCCATG CCTATGACAG TCACGGCATG TTGCATGAGG CCGCGTCACG CGAACGGGCG
CGCGATGATC TGATCGACCG CTGGGATCGC GACCGGCAGG CGTCGCCTGA CCGCAGCCGC
ATCATACTCA CCCACACCAA CGACGAGGTT CGCGCCCTCA ACGAGGCCGC GCGCGAACGG
ATGCGGGAAG CCGGCGATCT CGGCGATGAC GTGCGCTTGG TGGTCGAACG CGGTGAGCGC
GGCTTCGCCA GCGGAGATCG CGTCATGTTC CTTCAGAACG AGCGCGGCCT TGGCGTCAAG
AACGGCACGC TCGGCACCAT CGAACAGGTC AGCACGCAGA GCATAACCGT GCTCACCGAT
GATGGCCGTT CCGTTGGCTT CGACCTCAAG GATTACGACC GCATCGACCA CGGCTATGCC
GCGACCATCC ACAAGGCGCA GGGCATGACC GTGGACCGCA CGCATGTTCT GGCGACACCG
GGCCTGGATG CTCACGGCAG CTATGTCGCC CTGTCGCGCC ATCGCGACAG CATGGACCTG
CACTATGGCC GCGATGACTT CGCTGACGAG AATAGGCTTG TCCGCACCCT GTCGCGCGAC
CGCGCCAAGG ACATGGCGTC AGATTACGAG CCGGCACAGA GCTACGCCGA GCGGCGCGGC
ATCACCTTCC GCGGGCGCGT GGAGCGGGTG GTCGAGATCG TCAAGCAGGT TCCCAAGAAG
GTGCGCGGCA TGTTCGATGG CCTGCGCCTG CCTGCCGATG GCGGGCAGGA GCCGGAACGG
GCGGCGCTGG AAAGGGAGAA TGCGGCAGAC CCGGAGAAGG CTTTGCGCCG CGCCCGGACC
AAGGCGCTCA TCCGCCATGC CCGCGCCGTG GATGCGATCT TCGAGGTGCA GGAGCGGGGC
GGCAATGCCA GCCCGGAGCA GGTGAAGGAA TTGCAAGAAG CCCGCAAGGT CTTCGAGGAG
GTGCGGCCCC ATGGCTCGCA CGATGCCGAG GCCGCCTACA AGAAGAGCCC GGAACTTGCC
TCGGAAGCGG CCACGGGACG CACCGCCCGC GCGATCCGCG CCCTACAGCT CGAGACCGAG
CTGCGCACCG ATCCGCAGCG CCGCGCCGAC CGCTTCGTGG AGCGTTGGCG GAGCCTCGAC
CGCGCCAGCC AGCACCAGTA CCAAGCGGGC GACATGTCCG GCTACAAGGC CACGCGGTCG
GCGATGGGCG ACATGGCAAA GAGTCTCGAA CGCGATCCGC AGCTTGAATC CATCCTCGAA
GGCCGCAAGA GAGACCTCGG CATCGGGATC GACTCGGGCC GCAGCCTTGG TCGGGAACTC
GCCTTCAGCC ACGGCATCGA CCTCGGCATA GGCCGGGGCA TCGGACTCTA A
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| Protein sequence | MAIFHLHVKV IGRKSGSSAV ASAAYRSASR LRDDRLERSH DFSNKRGVIH SEVMLPEDAP
EQWRDRERLW NDVEAFEVRK DAQLAREVEF ALPREMTQAQ GIELARDFVQ SEFVDQGMIA
DLNVHWDMAE DGTAKPHAHV MLNMRSVDED GFGPKVREWN RTEMVERWRE RWAELANERL
AELDIDARID HRSLEAQGIA LEPQSQIGAP AQRIEGEGIE AADRAEMHRE IAHNNGARII
ADPSIALDAI THQQSTFTRR DMAMFAHRHS DGIDQFNEVM GAMRGAPDLV ELGRDERGED
RFTTRDMIET EQRLHRAAEV MAEKERHEVG DRDRETALAR AEARGLVLSG EQAEALAHIT
DGRDLGVVVG YAGTGKSAML GVAREAWEAA GYEVRGVALS GIAAENLESG SGIASRTIAS
LEHGWGQGRD VLTSRDVLVI DEAGMVGTRQ LERVLSHAAE AGAKVVLVGD PQQLQSIEAG
AAFRSIFERH GGAEIGEVRR QREDWQRDAT RDLATGRTGD AIHAYDSHGM LHEAASRERA
RDDLIDRWDR DRQASPDRSR IILTHTNDEV RALNEAARER MREAGDLGDD VRLVVERGER
GFASGDRVMF LQNERGLGVK NGTLGTIEQV STQSITVLTD DGRSVGFDLK DYDRIDHGYA
ATIHKAQGMT VDRTHVLATP GLDAHGSYVA LSRHRDSMDL HYGRDDFADE NRLVRTLSRD
RAKDMASDYE PAQSYAERRG ITFRGRVERV VEIVKQVPKK VRGMFDGLRL PADGGQEPER
AALERENAAD PEKALRRART KALIRHARAV DAIFEVQERG GNASPEQVKE LQEARKVFEE
VRPHGSHDAE AAYKKSPELA SEAATGRTAR AIRALQLETE LRTDPQRRAD RFVERWRSLD
RASQHQYQAG DMSGYKATRS AMGDMAKSLE RDPQLESILE GRKRDLGIGI DSGRSLGREL
AFSHGIDLGI GRGIGL
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