| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2410 |
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| Symbol | |
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| ID | 5424834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | - |
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| Start bp | 2689129 |
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| End bp | 2692071 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640881663 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001417309 |
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| Protein GI | 154246351 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.246547 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGGTCGT TGCTCGCTCG CGTCATTGCT CTGCCGATGG CGCTCCTCGT AGCGCTCGTC
GTGGCGCCCC TGCTGACGTT GCCCGCCGGC AGCGCACGGG CGATGGAGGC CATCGCCCTG
CGCCTCGACG CCAAGGTGGT GGACCTGCTG CCCGCCGTGC AGCGCGAGAC AACCGAGGAC
GGCCGGTTCC AGATCTCCAC CGCACCCGAC GCGGAAGGCG TGGTCCGGCG CATCGAGGTG
CCCACCTCCG ACGGGCGCAG CCACGGCGAC TGGATCGCCT TCGCCCTCAC CAATAATACC
GACGAGCAGG TGGACCGCCT CATCGTCGCC CCGCACTACC GCATGTCCGG CTCCGGCCTG
TTCTGGCCCG ATCTCGGCAA CCGGCGGATC ACCTCGCTCA CCCCCAGCCA GGGCTTCAAG
CCGGAGCGGC AGACCGCGCC CGACGCCGAC GTGTTCCTGA TCACGCTGGA TCCCGGCTCC
ACCGTCACCT TCGTGGCCGA GCTGGGCAGC CCCACCCTGC CCCAGCTCTA TCTGTGGGAG
CCGGACGCCT ACAAGGACCG GGTGAACGCC TTCACCCTCT ACCACGGCAT CGTCATCGGC
ATCGCCGGCC TGCTGGCGCT CTTCCTGACC ATCCTGTTCG TGGTGAAGGG CTCGGTGATG
TTCCCGGCGG CGGCGGCACT GGCCTGGGCG GTGCTGGGCT ATATCGGCCT CGACTTCGCC
TTCTGGTCCA AGGTGTTCGG CCTGTCGCCC ATCGCCGAGC AATTCTGGCG GGCGGCGGGC
GAGGCGATCC TCACCGGCAC GCTGCTGGTG TTCCTGTTCG CCTATCTCAA CCTCAACCGC
TGGCACGTGC GCTACGTGCA CGTGGCCGCC GGCTGGCTCA CCTTCCTCGC CGCCCTGGTG
GCGGTGGCCC TGCTCGACGC GCCGGTGGCG GCCGGCATCG CCCGCCTGTC CCTGCTGGCG
GTGGCGGTGG CGGGGCTCGG CGTCATCATC TGGCTCAGCC AGCACGGCTA TGACCGGGCG
GTGCTCATCA TCCCCACCTG GTCGCTGCTG GTGGTGTGGG TGCTCATGGC CGGGCTCACG
GTGGCGGGCT TCGTCACCAA CGACCTTGCC GCCCCCGCCC TTTCCGGCGG CCTGGTGCTG
ATCGTCATGC TCATTGGCTT CACGGTAATG CAGCATGCCT TTGCCGGCAT CGGCGGCATC
CAGGGCTCCA CCTCCGAGCT GGAACGCCGG GCGCTGGCCT TGGCCGGCTC CGGCCTCATC
GTGTGGGACT GGGATGTGGA CACCGACCGC ATCTACACCT CCCCCGAAGC GGAGGAGGCG
CTGGGCCTCA AGCGGCATTC GCTGGAGACC GAGGCCGCCG GCTGGCTGGA GGTACTGCAC
CCCGCCGACC GTGACCGCTT CCGCGCCACG CTGGACGGCA TCATCGACCA GCGCCGCGGC
CGCATCGACC AGGACTTCCG GCTGCGCGCC ATCGACGGCC ACTACCTCAC CTTCAACCTG
AAGGCGCGCC CGGTGGTGGG CGCCGACGGC GAAGTGGTGC GCTGCGTCGG CACCCTGATG
GACGTGACCG GCGAGCGCAT CGCCGCCGAG CGCCTGCTGC ACGACGCGGT GCGCGACAAC
CTCACCGGCC TGCCCAACCG GGAATTGTTC CTCGACCGCC TGTCCCAGGC CCTCACCATG
GCCCGCCTCG ACGACAAGGT GAAGCCGACG GTGATGGTCA TCGACCTCGA CCGCTTCAAG
CAGGTCAACG TGCAGGTGGG CATGGCGGTG GCCGATTCCA TCCTGCTCAC GGTGGCCCGC
CGCCTGATGC GCCTGTTGAA GCCGCAGGAC ACGCTGGCGC GCATCTCCGG CGACCAGTTC
GGCATGATCC TCATGTCCGA GCGCGACGCC GAGCGCATCA CCACCTTCGC CGACACCCTG
CGCCGCTCCC TGCGCGCGCC CATTGCCTTC GCGGATCGGG AAGTGTTCGT CACCGCCTCC
ATCGGCCTCG TACTGGCGGG CCCCGACCAG TCGAAGCGCG AGGAGGTGCT CAAAGACGCC
GAGCTCGCGA TGTATTACGC CAAGCGCATC GGCGGCGACC GCATCGAGGT GTTCCGCCCG
GCCATGCGCC AGCAGAAGAT CGACCGGGTG GTGCTGGAAG GCGAGCTGCG CGAGGCCCTC
GCCAGGAACC AGATCTCGGT GCGCTACCAG CCCATCGTGC GCCTGGGCGA CCGCGCCATC
GGCGGGTTCG AGGCCTATAT GCGCTGGAAC CATCCGCGCC TCGGTGAACT CGCCGCTTCC
GAATTCCTGC TGCTGGCGGA GGAGACCGGG CTCATCCTCG ACCTCGGCCT GTTCGTGCTC
GACGCTGCGG CGCGCCAGCT CGGCCAGTGG CAGCGCACCC TGCGGGTGGA CCCGCCGTTG
TTCATGCATG TGAACGTCTC GTCCCGCCAG CTGCTACGGC ACGATTTGAT CCAGGACCTG
AAATCCGTGC TCGCCCGCAA CGCGGTGGCG CCCGGATCGC TCAAGCTGGA GGTCACCGAG
AGCCTGGTGA TGGAGAACCC CGAATATGCC GCCGTGGTGC TCGGCCGCAT GCGGGAGCTG
GGCGCGGGCC TGTGCCTCGA CGATTTCGGC ACTGGCTATT CCGCCCTCTC CTATCTCCAG
CGCTTCCCGT TCGACAGCGT GAAGATCGAC CCGCGCTTCG TGCGCGACAC CGCCAAGGGT
GCCGCCCGCG CGGCCCGGCC GGTGATCGTC GGCGCCATGA TCGATCTCGC CCACGACCTC
GGCATGGACG TGATGGCGGA GGGCCTGGAG AAGGAAACCG AGGCCGCCGA GATGGCGCGC
TTCGGCTGCG AATACGGCCA GGGCGTGGTC TTCGGCGAGC CCCTCACCGC CGAGGAGTGC
CGCACCCTGA TCGAGCCGGC TCCGGTGGAG ACCCGCAAGA AGCGCTCCAC CGCCGCCGAA
TAG
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| Protein sequence | MRSLLARVIA LPMALLVALV VAPLLTLPAG SARAMEAIAL RLDAKVVDLL PAVQRETTED
GRFQISTAPD AEGVVRRIEV PTSDGRSHGD WIAFALTNNT DEQVDRLIVA PHYRMSGSGL
FWPDLGNRRI TSLTPSQGFK PERQTAPDAD VFLITLDPGS TVTFVAELGS PTLPQLYLWE
PDAYKDRVNA FTLYHGIVIG IAGLLALFLT ILFVVKGSVM FPAAAALAWA VLGYIGLDFA
FWSKVFGLSP IAEQFWRAAG EAILTGTLLV FLFAYLNLNR WHVRYVHVAA GWLTFLAALV
AVALLDAPVA AGIARLSLLA VAVAGLGVII WLSQHGYDRA VLIIPTWSLL VVWVLMAGLT
VAGFVTNDLA APALSGGLVL IVMLIGFTVM QHAFAGIGGI QGSTSELERR ALALAGSGLI
VWDWDVDTDR IYTSPEAEEA LGLKRHSLET EAAGWLEVLH PADRDRFRAT LDGIIDQRRG
RIDQDFRLRA IDGHYLTFNL KARPVVGADG EVVRCVGTLM DVTGERIAAE RLLHDAVRDN
LTGLPNRELF LDRLSQALTM ARLDDKVKPT VMVIDLDRFK QVNVQVGMAV ADSILLTVAR
RLMRLLKPQD TLARISGDQF GMILMSERDA ERITTFADTL RRSLRAPIAF ADREVFVTAS
IGLVLAGPDQ SKREEVLKDA ELAMYYAKRI GGDRIEVFRP AMRQQKIDRV VLEGELREAL
ARNQISVRYQ PIVRLGDRAI GGFEAYMRWN HPRLGELAAS EFLLLAEETG LILDLGLFVL
DAAARQLGQW QRTLRVDPPL FMHVNVSSRQ LLRHDLIQDL KSVLARNAVA PGSLKLEVTE
SLVMENPEYA AVVLGRMREL GAGLCLDDFG TGYSALSYLQ RFPFDSVKID PRFVRDTAKG
AARAARPVIV GAMIDLAHDL GMDVMAEGLE KETEAAEMAR FGCEYGQGVV FGEPLTAEEC
RTLIEPAPVE TRKKRSTAAE
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