| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1899 |
|---|
| Symbol | |
|---|
| ID | 5421471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 2140637 |
|---|
| End bp | 2141386 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640881147 |
|---|
| Product | pyrimidine 5'-nucleotidase |
|---|
| Protein accession | YP_001416801 |
|---|
| Protein GI | 154245843 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.226115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTC CTGTGATCAA CCCGTTTCCC GGCACGTCGT CTTCCGCCTT CGACGCGGTG
GACACCTGGG TGTTCGACCT CGACAACACC CTCTATCCCG CCCACCACGA TCTGTGGTTC
CAGATCGATG CCCGCATGAA GGGCTACATC TCGGATCTGC TGGGCATCCC GCCCGACGAC
GCCTTCCGCA TCCAGAAGGA CTATTACCGC CGCTACGGCA CCTCCCTGCG CGGCCTGATG
ATCGAGCACG GGGTGGAGCC GGACGCCTTC CTCGCCCACG TGCACGACGT GGACCTGTCG
GGGCTCGACG CGTCGCCACG CCTTGCCGCC GCCATCGAGG CGCTGCCAGG GGCGAAGATC
GTCTACACCA ACGGCTCGGA GCGCCACGCC CGCAACGTGC TGGAAAAGCT GGGCATCGAT
GCCCATTTCG CCGCCGTGCA CGACATCGTG GCCGCCGAAT TCCACCCCAA GCCCACCGAG
GAAGCCTACC TGCGCTTCCT CAGGGCCCAC GGGGTGGACC CGACCCGCTC GGCCATGTTC
GAGGACCTCG CCCGCAACCT CGAGGTGCCG CACCGGCTGG GCATGGTGAC CGTGCTGGTG
GTGCCGCCGG ACGAGACCAT CGCCGCCCGC GAGACCTGGG AGTTCGAGGG CCGCGAGGAC
GCCTATGTGG ACCACATCAC CGAGGACCTC GCCGGCTTCC TCGAAACCGT GGCGCGGACG
GCCCCGCCGC CGGTCAATGA GCCGGACTAG
|
|---|
| Protein sequence | MTLPVINPFP GTSSSAFDAV DTWVFDLDNT LYPAHHDLWF QIDARMKGYI SDLLGIPPDD
AFRIQKDYYR RYGTSLRGLM IEHGVEPDAF LAHVHDVDLS GLDASPRLAA AIEALPGAKI
VYTNGSERHA RNVLEKLGID AHFAAVHDIV AAEFHPKPTE EAYLRFLRAH GVDPTRSAMF
EDLARNLEVP HRLGMVTVLV VPPDETIAAR ETWEFEGRED AYVDHITEDL AGFLETVART
APPPVNEPD
|
|---|
| |