| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1833 |
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| Symbol | trmE |
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| ID | 5422954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 2060406 |
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| End bp | 2061701 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640881081 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001416735 |
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| Protein GI | 154245777 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0890064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0768704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCCTCTTCGC CCTCTCGTCG GGCCGCCTGC CGGCCGGCGT GGCGGTGCTG
CGCATCAGCG GTCCCGAGGC GGCGGCGGCC GTATTGGCCC TGTGTGGCGT GCTGCCCCCG
CCCCGCGTCG CCCGCTACGG CGCGCTCAGC GATCCACGGA CCGGAGAGAC GCTGGACCGC
GGCCTCATCC TGTTCTTCCC CGGCCCCGCC AGCGCCACGG GGGAGGATGT GGCCGAGCTT
CATCTCCATG GCGGGCGCGC CGTGGTGGCG GCGGTGCTGC GGGCCTTGTC CGCCCTGCCC
GGCCTGCGCC CGGCCGAGGC CGGCGAATTC ACCCGTAGAG CCCATGCCAA CGGCAAGCTG
GACCTGGCGG AGGTGGAGGG CCTGGCCGAT CTCGTCGCTG CGGAGAGCGA GGCGCAGCGC
AAGCAGGCCT TGGCGCTGGC CTCCGGCGCC CTCTCCCGTC GGGTGGAGGA GTGGCGCGTG
GGGCTGGTCT CTGCCCTTGC CTTGATCGAG GCCGGCATCG ATTTCTCGGA CGAGAGCGAC
GTGTCGGGAG AGGTGACGAT GGATGCCGTC GCCCGCCTCG CCAGGCTGAA GGAGGAATTG
CTTGCCGCTC TCACCGACGC GGCGCGGGGC GAGCGGGTGC GGGACGGTCT GGTGGTGGCC
ATTTCCGGCC CGCCCAATGC CGGAAAATCC ACCCTCTTGA ACCGCCTTGC CGGGCGCGAG
GCGGCCATCG TCTCCGCCCT TCCCGGCACC ACCCGCGACG TGCTGGAGGT GCATCTGGAA
CTGGCCGGGC AGGCCGTGAC CCTGCTGGAC ACCGCCGGCC TGCGTGAGAC CTCCGACCTT
GTGGAAGCCG AAGGCGTGCG TCGCGCCCTG GCGCGGGCGG AAGGTGCGGA CGTGGTGCTC
TGGCTCTGCG ATACCGGCTC GCAGCCGCCC CCTGCCCTCG CCCACGCCGT GAAGGTGCGC
ACCAAGATCG ACCGGGATGC CGCCATTCCC TTAGGCTGGA TCGGCATTTC CGCTGCCTCT
GGAGCGGGCG TGGACACCCT CGTCAGCCGG CTGGAACAGG AGGCGGACCG CCTCGGGGGG
CGCGAGCCGG CGCTCATTAC CCGCGAACGG CAGCGGCGGG CGCTGGAGGT GGCCACGCTG
CATCTGGAGC GGGCGCTGGG CGACTTCGGC GGCCATGAGG AATTGCGGGC CGAGGACGTG
CGCCTCGCGG TGCGGGCTCT GGACCAGCTC ATCGGGCGGG TGGATGTGGA GGATGTGCTG
GACGCCCTGT TCAGTACCTT CTGCATCGGC AAATAG
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| Protein sequence | MTDTLFALSS GRLPAGVAVL RISGPEAAAA VLALCGVLPP PRVARYGALS DPRTGETLDR
GLILFFPGPA SATGEDVAEL HLHGGRAVVA AVLRALSALP GLRPAEAGEF TRRAHANGKL
DLAEVEGLAD LVAAESEAQR KQALALASGA LSRRVEEWRV GLVSALALIE AGIDFSDESD
VSGEVTMDAV ARLARLKEEL LAALTDAARG ERVRDGLVVA ISGPPNAGKS TLLNRLAGRE
AAIVSALPGT TRDVLEVHLE LAGQAVTLLD TAGLRETSDL VEAEGVRRAL ARAEGADVVL
WLCDTGSQPP PALAHAVKVR TKIDRDAAIP LGWIGISAAS GAGVDTLVSR LEQEADRLGG
REPALITRER QRRALEVATL HLERALGDFG GHEELRAEDV RLAVRALDQL IGRVDVEDVL
DALFSTFCIG K
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