Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_1829 |
Symbol | |
ID | 5421342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | + |
Start bp | 2055882 |
End bp | 2056730 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640881077 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001416731 |
Protein GI | 154245773 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.037769 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGGTGC GGGTGTGCAT CACCGGCTCG CCGGTCAGCT ATTCACGGTC GCCGCTGCTT CATGGCTATT GGCTGAAGGC CTACGGTATC GACGGAGATT ACGGCCGCGA GGAAGTGCCC CCCGCGCAGG CGGCGGACTT CTACCGCAGC CTCGCGGCGC GCGGCTATGC CGGCTGCAAT GTCACCGCCC CCAACAAGGA AATCGCCTTC TCGGTTCTGG ACGAGGCGGA TGAGAGCGCG GCGGCGCTGG GCTCCGCCAA CACCCTGTGG CTGGAGGACG GCCGGCTGTG CGGCGCCAGC ACCGACGGTT ACGGCTTCAT CGCCAATCTG GATGCGACAG TGCCGGGCTG GGATGGGGCG CGCAAGCTGG CGCTGGTGCT GGGCGCGGGC GGTGCCTCGC GGGCCATCGT GCATGCAATG GTTGAGCGCG GGTTCGAGCG GATCGTGCTG GCCAATCGAA CGCTGGAGCG GGCCGAGGCC ATTGCGGTGG CGTTCGGCAA AACGGTCGTT CCGCTGGCCT TCGACAAGGC GGGCGAGGTG ATGGCGGATG CCGACATCCT GGTGAATTGC ACCTCGCTTG GCATGAAGGG CGCAGCCGCG CTCACCGTGG ACCTGTCGCG CCTCCGACCC GAGGCGGTGG TGAGCGATAT CGTCTATGTG CCGCTCCTCA CTCCCTTGTT GACCGAGGCG GCGGCGCGCG GACTGCGTAC TGTGGACGGC CTCGGCATGC TGCTGCATCA GGGGGTGCCC GGCTTCGAGC GCTGGTTCGG GGTGCGGCCG GAGGTGACCC CCGAATTGCG CGAGCTGTTG ATCGCGGATC TTCGGGCCAA GGGCCAGCTG GCGGCCTGA
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Protein sequence | MTVRVCITGS PVSYSRSPLL HGYWLKAYGI DGDYGREEVP PAQAADFYRS LAARGYAGCN VTAPNKEIAF SVLDEADESA AALGSANTLW LEDGRLCGAS TDGYGFIANL DATVPGWDGA RKLALVLGAG GASRAIVHAM VERGFERIVL ANRTLERAEA IAVAFGKTVV PLAFDKAGEV MADADILVNC TSLGMKGAAA LTVDLSRLRP EAVVSDIVYV PLLTPLLTEA AARGLRTVDG LGMLLHQGVP GFERWFGVRP EVTPELRELL IADLRAKGQL AA
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