| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1633 |
|---|
| Symbol | |
|---|
| ID | 5424782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 1850567 |
|---|
| End bp | 1852351 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640880880 |
|---|
| Product | shikimate kinase., 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001416536 |
|---|
| Protein GI | 154245578 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.364457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCCTG CCCCGGTGAC ACCTGCTCCG GTGACGCCTG CCGACATGGT CCGCCGCCTC
GGGCGCCGCT CCATCGTGCT GGTGGGCATG CCGGGGGCCG GCAAGTCGTC GGTGGGCCGC
AGGCTCGCCA AGCGGCTCGG CCTGCCCTTC GTGGATGCCG ACGAGGAGAT CGAGCGCGCC
GCCTGCATGA GCATTCCGGA AATCTTCGCC CGCCGTGGCG AGGTGGAGTT CCGCGAGGGC
GAGAAGCGGG TAGTGGCGCG GCTGCTCCAG TCCGGCCCCA GCGTGCTCGC CACCGGCGGC
GGCGCCTTCA TGAACAGTGA GACCCGCGAC GCGGTGGCCC GCCAGGGCGT CTCGGTCTGG
CTGCGTGCCG ACCTCCACAC CCTGCTCAGG CGTGTGAAGA AGCGCACCGA CCGCCCCCTC
CTTGCCCAGG GCGACCCGGC GGCGAAGCTC GCCACCCTGC TGCAGCAGCG CGGCGACACC
TACGCCCTCG CCGACGTGAT CGTGGACAGC CGCGACGTGG TGCACGAGAT GGTGGTGGAA
GAGGTGATCG GCGCCGTGCA CCGCCATCTC ATCCAGTATC CCGAAGGGAC CCGTTCCATG
TCCGCCCCTA TTGGTCCCGC CGCCCTCGGC CCCGCCGATC TGGCCCATGC CGAGCCCGAG
CCCCTGCCCG TCGGCGACAT CACCCGCAGC ACCGTGCGCG TGGATCTGGC CGGGCGGCCC
TATGACATCT ATATCGGCCC CGGCCTGCTG GCCGAGGCGG GCACCCATGT GACCGTGCTG
CGCAAGGGCG CGCGGGTCGC CATCGTCACC GACGCCAACG TGGCGGCCGC CGGGCACCTG
AAGACGGTTC AGGACTCGCT ATCCGCCGCC GGCATCGACC ATACGGCCAT CGTGGTGGAG
CCGGGCGAGA AGACCAAGGG CTGGCCCGGC CTCCAGCAGG TGGTGGAAGG CCTGATTTCC
GCCCGCATTG AGCGGCGCGA CCTGGTGCTG GCGCTGGGTG GCGGCGTGGT GGGCGACCTC
GCGGGCTTCG CCGCCTCGGT GCTGCGGCGC GGGGTGGACG TGGTGCAGGC GCCGACCACC
CTGCTCAGCC AGGTGGACTC TTCCGTCGGC GGTAAGACCG GCATCAACTC GCCCCAGGGC
AAGAACCTGG TCGGCGCCTT CCACCAGCCG GTGCTGGTGT TGGCCGATAC CGCAGCGCTG
GACACCCTGC CCGTGCGCGA GGTGCGCGCC GGCTATGCGG AAGTGGTGAA ATACGGCCTG
CTCGGCGACC GCGCCCTGTT CGACACGCTG GAGCGCGACT TCGCCGGCGT CATCAATGGC
GGGCCGGAGC GCATCTCGGC CGTGGCGGCG AGCTGCATGG CCAAGGCCGC CATCGTCGCC
CGCGACGAGA AGGAGACCGG CGACCGGGCG CTTCTCAACC TCGGCCACAC CTTCGGCCAC
GCGCTGGAGG CGGGCGCCGG CTATTCCAGC CGCCTGCTGC ACGGCGAGGG CGTCGCCATC
GGCATGGCGC TGGCCTTCGC CTTCTCGGCG CGACTCGGCC TGTGCCCGGG ACAGGACGTG
ACGCGGGCGG TGCGGCACCT GGAAGCCGCC GGCCTGCCCA CGAAGATTTC CGACGTGCCG
GGCGAATTGC CGGACACGGA CGGGCTGATG GCCCTCATCG CCCAGGACAA GAAGGTCAGC
CGCGGCGCAC TCACCTTCAT CCTGGTGCGC GGCATCGGCG AGGCCTTCGT GGCCAAGGAC
GTGAACCCGG ACGAGGTGCG CGCCTTCCTG GCGGAGATGC GCTGA
|
|---|
| Protein sequence | MTPAPVTPAP VTPADMVRRL GRRSIVLVGM PGAGKSSVGR RLAKRLGLPF VDADEEIERA
ACMSIPEIFA RRGEVEFREG EKRVVARLLQ SGPSVLATGG GAFMNSETRD AVARQGVSVW
LRADLHTLLR RVKKRTDRPL LAQGDPAAKL ATLLQQRGDT YALADVIVDS RDVVHEMVVE
EVIGAVHRHL IQYPEGTRSM SAPIGPAALG PADLAHAEPE PLPVGDITRS TVRVDLAGRP
YDIYIGPGLL AEAGTHVTVL RKGARVAIVT DANVAAAGHL KTVQDSLSAA GIDHTAIVVE
PGEKTKGWPG LQQVVEGLIS ARIERRDLVL ALGGGVVGDL AGFAASVLRR GVDVVQAPTT
LLSQVDSSVG GKTGINSPQG KNLVGAFHQP VLVLADTAAL DTLPVREVRA GYAEVVKYGL
LGDRALFDTL ERDFAGVING GPERISAVAA SCMAKAAIVA RDEKETGDRA LLNLGHTFGH
ALEAGAGYSS RLLHGEGVAI GMALAFAFSA RLGLCPGQDV TRAVRHLEAA GLPTKISDVP
GELPDTDGLM ALIAQDKKVS RGALTFILVR GIGEAFVAKD VNPDEVRAFL AEMR
|
|---|
| |