| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1058 |
|---|
| Symbol | |
|---|
| ID | 5425043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 1212698 |
|---|
| End bp | 1214233 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640880304 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001415965 |
|---|
| Protein GI | 154245007 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.712242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.943186 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGACC TGTTTGCCCT TTCCGGGCTC GCGCCCTGCC TAAAGGGAGG CGCCTTCGCC
GCTTCCCTGC TGCTCATGAA CGGCTGCATG GTGGGGCCGG ACTTCGAGGC GCCCGATGCA
CCGCGCGTCA GCGGCTACCT GCCCGAAGGC ACGCCCCGTC CTACGACCTC GGCGGATGTC
CATGGTGGAA GCCGCCAGGT CTTTCTCCGC GGTCGCGATC TGCCCGGCGA GTGGTGGCGG
GTGTTCCGCA ACAAGCAGAT CGATGCCTTC GTCGCGGAGG CGATCCGCAA CCATCCGGAC
GTGACCGCCG CCCAGGCTGC GCTGCGGGCG GCACGCGAAA ACGCCCTGGC CGGCGAGGGC
GCCCTGTTTC CGCAGGTGTC GGCGAGCGGC AGCGCCACCC GGCAGGTCGC CTCGCTGGCG
AGCCAGGGCG AGAGCGGCAA CACCAGCCCC TACAATCTCT ACAACGCCTC GGTCAGCGTC
AGCTATGTGC TGGACGTATG GGGTGGCACC CGCCGGCAGG TCGAGGCGCT GGAGGCGCAG
GCGGACTATC AACGCTTCCA GCTGGAGGCG ACCTATCTCA GCCTCACCGC GAATGTGGTG
ACGGCGGCCA TCACCGATGC CTCTCTGCGC GCGCAGATCG AAGCAACCAA CGACATCATC
AAGTCCGAGC AGGAACAGCT CAAGCTGGTC CAGCGCCAGT TCGAGCTGGG CGCGGTGGCT
CAATCCGACG TGCTATCGCA GCAGTCCAAT CTCGCCCAGA CCCAGGCGAC CCTGCCGCCG
CTGCAGAAGC AGCTCGCCCA GCAGCGTAAC CAGCTGATGG CCTATCTCGG CCGGCTGCCG
AGCCAGGATC GGGGCGAGCA CGTGACCCTT GCCAGTCTCA CATTGCCGCG CGATCTTCCC
GTCAGCGTCC CCTCCGCGCT GGTGCGGCAG CGGCCCGATA TCGGCGCGGT GGAGGCGAGC
CTGCACAAGG CCACCGCCAC CGTGGGCGTC AACGTGGCCA ATATGCTGCC GCAGGTTCAG
CTCACCGGTA GCTACGGCAG GGCCGGCCTC ACCCCCGACA GCCTGTTCTC GCCGGGCACC
GCCGCCTGGA GCATCGCCGG CAGCGTCGCA CAGACGGTGT TCGACGGCGG GACGCTCTAC
CACGACAAGG AATCCGCCGT CGCGAGCAAC GAGCAGGCGC TGGCGCAATA CAAGAGCACG
GTCATCACCG CCTTCCGCGA CGTGGCGGAT TCGCTGCGCG CCATCGAGGC TGATGCCAGC
ACGCTGAAGG CCCAGCTCGC CTATGAGAAG GCGGCGCAGG AGAGCGTGAA GATCTCCCGC
ACCCAGTATC TGGCCGGCGC GGTGACCTAT CCCTCGGTGC TCACAGCCGA GCAGAACTTC
CAGCAGGCCG TGGTCGCGCG GGTGAAGGCG CAGGCCGCCC GCTTCACCGA TACCGCGGCG
CTGTTCCAGG CCCTGGGCGG CGGCTGGTGG AACCGTGTGG ACCAGACGGC GCAGGCCGAA
CCCCGCACCA ACGCCGGCTA TTTCCAGGAC CACTGA
|
|---|
| Protein sequence | MRDLFALSGL APCLKGGAFA ASLLLMNGCM VGPDFEAPDA PRVSGYLPEG TPRPTTSADV
HGGSRQVFLR GRDLPGEWWR VFRNKQIDAF VAEAIRNHPD VTAAQAALRA ARENALAGEG
ALFPQVSASG SATRQVASLA SQGESGNTSP YNLYNASVSV SYVLDVWGGT RRQVEALEAQ
ADYQRFQLEA TYLSLTANVV TAAITDASLR AQIEATNDII KSEQEQLKLV QRQFELGAVA
QSDVLSQQSN LAQTQATLPP LQKQLAQQRN QLMAYLGRLP SQDRGEHVTL ASLTLPRDLP
VSVPSALVRQ RPDIGAVEAS LHKATATVGV NVANMLPQVQ LTGSYGRAGL TPDSLFSPGT
AAWSIAGSVA QTVFDGGTLY HDKESAVASN EQALAQYKST VITAFRDVAD SLRAIEADAS
TLKAQLAYEK AAQESVKISR TQYLAGAVTY PSVLTAEQNF QQAVVARVKA QAARFTDTAA
LFQALGGGWW NRVDQTAQAE PRTNAGYFQD H
|
|---|
| |