| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_0911 |
|---|
| Symbol | |
|---|
| ID | 5423257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 1022889 |
|---|
| End bp | 1023659 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640880158 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001415819 |
|---|
| Protein GI | 154244861 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0935429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGAGGCT TGAAGGGTAA AATAGTTGTT GTAACTGGCG GTGGCGGCGG CATCGGATCG
GCAACCTGCC GGCGCTTTGC CGAGGAAGGC GCCCGCGTCG TGGTCGCCGA CATCAGCGCT
GCCGCGGCGG AGCGGGTAGC CGAGGAAATC AGAACCGCCG GTGGCGATGC CACCATCGCG
GTCGTCGACC TCACAGATTT CGCAGCGACG GCGGTCAAGG TGGCCGAAGT AGAGAGCGCC
TTCGGTCCCA TCGACATCCT GGTCAATAAT GCCGGCTGGG ACCTGTTCGT GCCGTTCCTG
AAGTCGGAGC CCGATTTCTG GACCAGGATC ATCGACATCA ACCTGCGCTC GGTGCTGAAC
ATCACCAAGC CAGTGCTCGC CTCCATGGTC GCGCGCGGCG TTTCCGGACG CGTGGTCTCC
ATCGGGTCCG ATGCCGGGCG CGGCGGCTCC TCCGGCGAAG CGGTCTATGC CGCCTGCAAG
GCCGGGGTCA TCGCCTTCAT GAAGACGCTC GCCCGCGAGC ATGCGCGCAA CGGCATCACC
TTCAACACCG TGTGCCCGGG CGTCACCGAG ACGGCCATGC TGGAAAGCTT CATGGATGCG
GCCGGCGACA AGGAGAAGCT GCGCGTCGCC TTTACCCGCG CGGTGCCCCT CGGCCGTCTC
GGCAAGCCCG ACGACCTGCC GGGCGCCATC GTGTTCCTGT CCAGTGACGA CGCCGCCTTC
ATCACCGGCC AGGTGATATC GGTCTCCGGC GGCCTCACCA TGCACGGTTG A
|
|---|
| Protein sequence | MRGLKGKIVV VTGGGGGIGS ATCRRFAEEG ARVVVADISA AAAERVAEEI RTAGGDATIA
VVDLTDFAAT AVKVAEVESA FGPIDILVNN AGWDLFVPFL KSEPDFWTRI IDINLRSVLN
ITKPVLASMV ARGVSGRVVS IGSDAGRGGS SGEAVYAACK AGVIAFMKTL AREHARNGIT
FNTVCPGVTE TAMLESFMDA AGDKEKLRVA FTRAVPLGRL GKPDDLPGAI VFLSSDDAAF
ITGQVISVSG GLTMHG
|
|---|
| |