| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_0442 |
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| Symbol | |
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| ID | 5421561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 482291 |
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| End bp | 485248 |
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| Gene Length | 2958 bp |
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| Protein Length | 985 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640879689 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_001415357 |
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| Protein GI | 154244399 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.692664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.757094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCT ATCATCTTCA CGTTAAGGTC ATCGGCCGCA AGGCCGGCTC CAGCGCGGTG
GCGTCCGCCG CCTACCGCTC GGCCTCACGG CTGCGCGACG CGCGGATTGA TCGCGTTCAG
GACTTCTCGG CGAAGCGCGG TGTCGTGCAC TCAGAGGTGT TGCTGCCCGA CGGGGCGCCC
GAGATGTGGC GCGACCGCGA GCGGCTGTGG AACGATGTTG AAGCCTTCGA GGTCAGGAAA
GACGCGCAGC TTGCCCGTGA GGTCGAGTTC GCTCTGCCGC GGGAGATGAG TCAGGCGCAG
GGGATCGCGC TCGCCCGTGA CTTCGTCGAG GCGGAGTTCG TCGATCTCGG AATGGTCGCC
GATCTCAATG TGCATTGGGA TATTGGCGAG GACGGCATGG CGAAACCCCA TGCCCATGTC
ATGCTCACCA TGCGCTCGGT GGACGAGGAC GGCTTCGGCC CAAAGGTCCG GGAGTGGAAC
GCGACCGAGA TGGTGGAGCG CTGGCGCGAA CGCTGGGCCG CGCTCGCCAA TGAGCGCCTC
GCGGAGCTCG ATATCGACGC GCGCATCGAT CATCGCAGCC TGGAAGCACA GGGCATCGCG
CTGGAGCCGC AGAGCCAGAT CGGCGCGCCC GCGCAACGCA TCGAAAGAGA GGGGATCGAG
GCCGCCGATC GTGCTGAGGT TCATCGCGAG ATCGCGCGCG GCAATGGCGC GCGGATCATC
GCCGATCCGG CGCTGGCACT GGAGGCCATC ACCCATCAGC AATCGACCTT CACCCGGCGC
GATATGGCGC GCTTCGCGCA CCGTCACAGC GACGGGATCG AGCAGTTCAA CGAGGTGATG
GGCGCAATGG GCCGCGCGCC TGATCTCGTC GAACTCGGCA GAGACGGACG CGGTGAGGAT
CGCTTCACCA CGCGGCAGAT GATCGAGGCC GAGCAGCGTC TGCACAGGGC TGCCGGTCTC
ATGGCGGAAC GCGAACGCCA TGCCGTAAAG GATACGGAGA GGGAGGCGGC TCTTGAGCGC
GCCGAGCAGC GTGGCCTTGT TCTCTCCGGT GAGCAGTCTG ACGCTCTGGC GCACATCACC
GGCACGCACG ATCTCGGCAT AGTCGTCGGT TATGCCGGGA CGGGGAAGAG CGCCATGCTG
GGTGTCGCGC GAGAGGCTTG GGAGGCGGCC GGCCTGGAGG TTCGCGGCGT CGCGCTGTCC
GGCATCGCGG CGGAGAATCT GGAGAGCGGA TCGGGCATTG CATCCCGCAC TATCGCCAGC
CTGGAACATG GCTGGGGACA GGGTCGGGAT CTGCTCACCT CACGCGATGT TCTGGTGATC
GACGAGGCCG GCATGGTCGG CACGCGCCAG CTGGAGCGCG TTCTCTCCCA TGCCGCTGAT
GTTGGCGCCA AGGTGGTGCT GGTCGGTGAT CCGCAGCAGC TGCAATCCAT CGAGGCGGGC
GCCGCCTTCC GTTCGCTCGT TGAGCGTCAC GGCGGGGCAG AGATCAGCGA GGTACGCCGC
CAGCGCGCGG ACTGGCAGCG CGACGCCACG CGCGATCTGG CGACCGGCCG GATCGGCGAG
GCCATCCAGG CCTATGACAG GGGCGGCATG GTCCATGCCG CGCGAACGCG CGAGCAGGCA
CGTGGCGAGC TGATCGACCG CTGGGACCGT GACCGGCAGG CCGCGCCGGA CCGCAGCCGC
ATCATTCTCA CTCACACCAA TGACGAGGTG CGCGCCCTCA ACCAAGCCGC CCGCGCGCGG
ATGCGGGAGG CGGGCGATCT CGGCGAGGAA GTGCAAGTCA TCGTGGAGCG GGGAGAGCGT
TCCTTTGCCC GTGGCGACCG CGTGATGTTC CTACAGAACG AGCGTGGGCT CGGGGTGAAG
AACGGCACGC TCGGCACCAT CGAAGAGGTC AGCGCGCAGT CCATATCCGT GCGTATTGAT
GATGGCCGAT CCGTCGCCTT CGACTTGAAG GACTACGACC GCATCGACCA TGGCTATGCC
GCCACCATCC ACAAGGCGCA GGGCATGACG GTGGACCGCA CCCATGTATT GGCAACGCCC
GGCATGGATG CTCATTCCAG CTATGTCGCG CTATCGCGCC ACCGCGACGG GATGGAGCTG
CACTTTGGCC GCGACGACTT CGCGGATAGG GACCGGCTGG TGCGCACCCT ATCGCGTGAC
CGGGCCAAGG ACATGGCGTC GGACTATGCG CGCTCCGATC CGGCGAAGGC CTATGCCGAG
CGCCGCGGCA TCACCTTCCG CCAGCGTGTC GTCGAGATCG TGCGCAAGGT CCCGGAAAAG
CTGCGCGACC TCGTCGACAC GCTCAGGCCG TCCGTGGACA CGACACGGGA AGTGCCAGCC
CTGCGCGAAG AACTCGGGAA CAGAGCCGAG CCGCTCGCGA AGGAGGCTGC CGACGATCCG
GAAGCAGTGC TGCGGCGAGC GCGAACCCGC GCCCTCGTCC GACATGCCCG CGCATGGGAT
GCGATCCTCA CCACGGCGGA AGCGACCGGC CAGGGCACGC CCGAGCACTT CCGCGAACTC
AGCGACGCCC GCAAGGACTT CGAGGAGGTG CGGCCCAATG GCTGGCGCGA TGCGGAAGCC
GCCTATGAAA GGAACCCGGA GCTGGTGCAC GAGGCGGCCG GCGGCAAGCT CAATCGCACC
ATTCGCGCCC TCCAGCTCGA AACGGAAATC CGCACCGACC CGGAGCGCCG CGCCGGTCAA
TTTGTCGAGC GCTGGAAGAA GCTCGACCAG CAGCGTCAGC GCCAGTACAG CGACGGCGAT
TACTCCGGCT ACAATGCTAC CCGCGTCCAG ATGGGCGACA TGGCACGGAG CCTGGAGCGC
GACCCGCAGC TCGAATCCTT GCTCGCCTCT CGTAGGAAGG AACTCGGGAT CAGCCTCAAC
ACAGGCCGCA GTCTTGGTCG CGAACTGGCC CACAGCCACG GCATCGACAT CGACCGCAGC
CGTGGTCTTG GACTCTAG
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| Protein sequence | MAIYHLHVKV IGRKAGSSAV ASAAYRSASR LRDARIDRVQ DFSAKRGVVH SEVLLPDGAP
EMWRDRERLW NDVEAFEVRK DAQLAREVEF ALPREMSQAQ GIALARDFVE AEFVDLGMVA
DLNVHWDIGE DGMAKPHAHV MLTMRSVDED GFGPKVREWN ATEMVERWRE RWAALANERL
AELDIDARID HRSLEAQGIA LEPQSQIGAP AQRIEREGIE AADRAEVHRE IARGNGARII
ADPALALEAI THQQSTFTRR DMARFAHRHS DGIEQFNEVM GAMGRAPDLV ELGRDGRGED
RFTTRQMIEA EQRLHRAAGL MAERERHAVK DTEREAALER AEQRGLVLSG EQSDALAHIT
GTHDLGIVVG YAGTGKSAML GVAREAWEAA GLEVRGVALS GIAAENLESG SGIASRTIAS
LEHGWGQGRD LLTSRDVLVI DEAGMVGTRQ LERVLSHAAD VGAKVVLVGD PQQLQSIEAG
AAFRSLVERH GGAEISEVRR QRADWQRDAT RDLATGRIGE AIQAYDRGGM VHAARTREQA
RGELIDRWDR DRQAAPDRSR IILTHTNDEV RALNQAARAR MREAGDLGEE VQVIVERGER
SFARGDRVMF LQNERGLGVK NGTLGTIEEV SAQSISVRID DGRSVAFDLK DYDRIDHGYA
ATIHKAQGMT VDRTHVLATP GMDAHSSYVA LSRHRDGMEL HFGRDDFADR DRLVRTLSRD
RAKDMASDYA RSDPAKAYAE RRGITFRQRV VEIVRKVPEK LRDLVDTLRP SVDTTREVPA
LREELGNRAE PLAKEAADDP EAVLRRARTR ALVRHARAWD AILTTAEATG QGTPEHFREL
SDARKDFEEV RPNGWRDAEA AYERNPELVH EAAGGKLNRT IRALQLETEI RTDPERRAGQ
FVERWKKLDQ QRQRQYSDGD YSGYNATRVQ MGDMARSLER DPQLESLLAS RRKELGISLN
TGRSLGRELA HSHGIDIDRS RGLGL
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