Gene Xaut_0064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_0064 
Symbol 
ID5422492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp69302 
End bp70864 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content68% 
IMG OID640879309 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_001414980 
Protein GI154244022 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.353758 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGTTGA GCCCCAAGCT GGAATTCCGC CAGAGCCAGT CCCTGGTGAT GACCCCGCAG 
CTGATGCAGG CCATCAAGCT GCTGCAGCTC TCCAACATGG AGCTGGTGGC CTACGTGGAG
GCGGAGCTGG AGCGCAATCC GCTCCTGGAG CGTATCACCG AAGGCGACGG CCCGGCCGAC
AGCGCCGGCG GCGAGACCCC CTCCGAGACC GCCCAGCGGG ACGACGCCCC CGCCCCCGAG
CCCGAGGCCG CTGTTTCCGG CGACTGGATG CCCGGCGACA TGGAGCCCAG CCGGGCGGCC
ATGGAAACCC GTCTCGACAC CGATCTCGGC AACGTCTTCC CGGACGACGC CCCCGCCGAC
CGCGGTGCCG CCGGCGGCGG CTCCACCGGC CAGAGCCCCT CCACCGGCGA ATGGGGCGGC
GGCGAGCGCG GCGAGGACTA CAATCCCGAA GCCTTCCTCA CCGCCGAAAT GACCCTGGCC
GACCACCTGG AAGCCCAGCT TGCGGTGGCG ATGAGCGATC CGGCGCGACG GCTGATCGGC
GTCAACGTCA TCGGCCTCAT CGACGAGACC GGCTATTTCA CCGGCGACCT CGACCAGCTG
GCGGAGCAAC TCGGCGTGGC GCGCGCCGAG GTGGAAGCCA TGCTGAAGCT CATCCAGACC
TTCGAGCCGT CTGGCGTGGG CGCGCGCAAC CTCGCCGAAT GCCTCGCCAT CCAGCTCAGG
GAGCGGGACC GCTTCGACCC CGCCATGCAG GCGCTGGTGG CGAACCTGGA GCTTTTGGCC
CGGCACGACC GCAACGCCCT CAAGCGGGTC TGCGCCGTGG ACAACGAGGA CCTTGCCGAC
ATGATCGGCG AGATTCGCCG GCTCGATCCC AAACCCGGCC TCGCCTTCGG CTCCGGCGTG
GTGCATCCGC TGGTGCCGGA TGTCTATGTG CGGGCGGGCA AGGACGGCGA GTGGCTGGTG
GAGCTGAATT CCGAGACCCT GCCACGGGTG CTGGTGAACC AGACCTATCA TGCCACCGTG
GCCAAGGTAG CGCGCTCGGC CGAGGACAAG AGCTTCCTGG CCGAATGCCT CCAGAGCGCC
AGCTGGCTGA CGCGCTCCCT CGACCAGCGG GCCCGCACCA TCCTGAAGGT GGCGAGCGAG
ATCGTGCGCC AGCAGGACGC CTTCCTGCTG CACGGTGTGC GCTATCTGCG GCCCCTGAAC
CTGCGCACGG TGGCCGACGC CATCGGCATG CACGAATCCA CCGTCTCGCG AGTCACCTCC
AACAAATACA TCTCCACCCC GCGCGGCGTG GTGGAAATGA AGTTCTTCTT CTCGTCGGCC
ATTTCCGCCT CGGGCGGCGG CGAGGCCCAT TCGGCCGAGG CCGTACGCCA CCGCATCAAG
CTGCTCATCG AGGCCGAGAG CGCGGAGGAC GTGCTCTCCG ACGACACCCT GGTGCAGAAG
CTGAAGGACG AGGGCATCGA CATCGCCCGC CGCACGGTGG CGAAGTATCG GGAAGGCATG
AACATTCCCT CCTCGGTCCA GCGCCGCCGC GAGAAGATGG CCCTGCGCAG CGAGGCCAGC
TGA
 
Protein sequence
MVLSPKLEFR QSQSLVMTPQ LMQAIKLLQL SNMELVAYVE AELERNPLLE RITEGDGPAD 
SAGGETPSET AQRDDAPAPE PEAAVSGDWM PGDMEPSRAA METRLDTDLG NVFPDDAPAD
RGAAGGGSTG QSPSTGEWGG GERGEDYNPE AFLTAEMTLA DHLEAQLAVA MSDPARRLIG
VNVIGLIDET GYFTGDLDQL AEQLGVARAE VEAMLKLIQT FEPSGVGARN LAECLAIQLR
ERDRFDPAMQ ALVANLELLA RHDRNALKRV CAVDNEDLAD MIGEIRRLDP KPGLAFGSGV
VHPLVPDVYV RAGKDGEWLV ELNSETLPRV LVNQTYHATV AKVARSAEDK SFLAECLQSA
SWLTRSLDQR ARTILKVASE IVRQQDAFLL HGVRYLRPLN LRTVADAIGM HESTVSRVTS
NKYISTPRGV VEMKFFFSSA ISASGGGEAH SAEAVRHRIK LLIEAESAED VLSDDTLVQK
LKDEGIDIAR RTVAKYREGM NIPSSVQRRR EKMALRSEAS