Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_0064 |
Symbol | |
ID | 5422492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | - |
Start bp | 69302 |
End bp | 70864 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640879309 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_001414980 |
Protein GI | 154244022 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.353758 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTGTTGA GCCCCAAGCT GGAATTCCGC CAGAGCCAGT CCCTGGTGAT GACCCCGCAG CTGATGCAGG CCATCAAGCT GCTGCAGCTC TCCAACATGG AGCTGGTGGC CTACGTGGAG GCGGAGCTGG AGCGCAATCC GCTCCTGGAG CGTATCACCG AAGGCGACGG CCCGGCCGAC AGCGCCGGCG GCGAGACCCC CTCCGAGACC GCCCAGCGGG ACGACGCCCC CGCCCCCGAG CCCGAGGCCG CTGTTTCCGG CGACTGGATG CCCGGCGACA TGGAGCCCAG CCGGGCGGCC ATGGAAACCC GTCTCGACAC CGATCTCGGC AACGTCTTCC CGGACGACGC CCCCGCCGAC CGCGGTGCCG CCGGCGGCGG CTCCACCGGC CAGAGCCCCT CCACCGGCGA ATGGGGCGGC GGCGAGCGCG GCGAGGACTA CAATCCCGAA GCCTTCCTCA CCGCCGAAAT GACCCTGGCC GACCACCTGG AAGCCCAGCT TGCGGTGGCG ATGAGCGATC CGGCGCGACG GCTGATCGGC GTCAACGTCA TCGGCCTCAT CGACGAGACC GGCTATTTCA CCGGCGACCT CGACCAGCTG GCGGAGCAAC TCGGCGTGGC GCGCGCCGAG GTGGAAGCCA TGCTGAAGCT CATCCAGACC TTCGAGCCGT CTGGCGTGGG CGCGCGCAAC CTCGCCGAAT GCCTCGCCAT CCAGCTCAGG GAGCGGGACC GCTTCGACCC CGCCATGCAG GCGCTGGTGG CGAACCTGGA GCTTTTGGCC CGGCACGACC GCAACGCCCT CAAGCGGGTC TGCGCCGTGG ACAACGAGGA CCTTGCCGAC ATGATCGGCG AGATTCGCCG GCTCGATCCC AAACCCGGCC TCGCCTTCGG CTCCGGCGTG GTGCATCCGC TGGTGCCGGA TGTCTATGTG CGGGCGGGCA AGGACGGCGA GTGGCTGGTG GAGCTGAATT CCGAGACCCT GCCACGGGTG CTGGTGAACC AGACCTATCA TGCCACCGTG GCCAAGGTAG CGCGCTCGGC CGAGGACAAG AGCTTCCTGG CCGAATGCCT CCAGAGCGCC AGCTGGCTGA CGCGCTCCCT CGACCAGCGG GCCCGCACCA TCCTGAAGGT GGCGAGCGAG ATCGTGCGCC AGCAGGACGC CTTCCTGCTG CACGGTGTGC GCTATCTGCG GCCCCTGAAC CTGCGCACGG TGGCCGACGC CATCGGCATG CACGAATCCA CCGTCTCGCG AGTCACCTCC AACAAATACA TCTCCACCCC GCGCGGCGTG GTGGAAATGA AGTTCTTCTT CTCGTCGGCC ATTTCCGCCT CGGGCGGCGG CGAGGCCCAT TCGGCCGAGG CCGTACGCCA CCGCATCAAG CTGCTCATCG AGGCCGAGAG CGCGGAGGAC GTGCTCTCCG ACGACACCCT GGTGCAGAAG CTGAAGGACG AGGGCATCGA CATCGCCCGC CGCACGGTGG CGAAGTATCG GGAAGGCATG AACATTCCCT CCTCGGTCCA GCGCCGCCGC GAGAAGATGG CCCTGCGCAG CGAGGCCAGC TGA
|
Protein sequence | MVLSPKLEFR QSQSLVMTPQ LMQAIKLLQL SNMELVAYVE AELERNPLLE RITEGDGPAD SAGGETPSET AQRDDAPAPE PEAAVSGDWM PGDMEPSRAA METRLDTDLG NVFPDDAPAD RGAAGGGSTG QSPSTGEWGG GERGEDYNPE AFLTAEMTLA DHLEAQLAVA MSDPARRLIG VNVIGLIDET GYFTGDLDQL AEQLGVARAE VEAMLKLIQT FEPSGVGARN LAECLAIQLR ERDRFDPAMQ ALVANLELLA RHDRNALKRV CAVDNEDLAD MIGEIRRLDP KPGLAFGSGV VHPLVPDVYV RAGKDGEWLV ELNSETLPRV LVNQTYHATV AKVARSAEDK SFLAECLQSA SWLTRSLDQR ARTILKVASE IVRQQDAFLL HGVRYLRPLN LRTVADAIGM HESTVSRVTS NKYISTPRGV VEMKFFFSSA ISASGGGEAH SAEAVRHRIK LLIEAESAED VLSDDTLVQK LKDEGIDIAR RTVAKYREGM NIPSSVQRRR EKMALRSEAS
|
| |