| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3648 |
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| Symbol | |
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| ID | 5455575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3903431 |
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| End bp | 3904132 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640879232 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001414903 |
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| Protein GI | 154254079 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.325516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000000000000965184 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAAAC CCGTTGCGAT GATCACCGGT GTTGGCCCCG GCACCGGATC GGCGCTGGCA
CGGCGCTTTG CGGCAGGCGG CTATGCCGTC GCGATGCTCG CGCGCGACAA GGAGCGGCTT
GCGGCACTGG AAGCGGAATT GCCGGACGCG AAGGCTTTCG TCTGCGATGT GTCGAAGGAA
GAGGAGATCG CGGCGGCCGT GAAGCAAGTG AGGGAGACCA TGGGTGCGCC CGAGGTCTTC
ATTCACAATG CGGTGGGCGG CACATGGGGC AGCTTCCTTG AAATCGACCC GAAAGACCTC
AATGGGAACT TTCAGGTCAA TACGATGGCG CTTCTTCATT TCGCCCGCGC GCTGGCCCCC
TCCATGATCG AAGCGGGCAA GGGCACAATT ATCGCAACGG GCAACACCTC GGCCCACCGC
GGCAAGGCCT TCTTCGCCGG CTTCGCACCG ACCAAGGCGG CGCAGCGCAT TCTCGCGGAA
GCCATGGCGC GCGATCTCGG GCCGAAGGGC GTTCATGTCG CCTATGTCAC CATCGATGCT
GTGATCGACG TGCCGTGGAC GCGGGAACGC TACAAGGATG CGCCCGACGA TTTCTTCATC
AAGCCCTCGG CAATTGCCGA CGAGACATGG CATGTTGCGC ATCAGGACAA GTCGGCCTGG
TCGTTCAATG TCGAGATCCG GCCCTATCGT GAAATCTGGT GA
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| Protein sequence | MAKPVAMITG VGPGTGSALA RRFAAGGYAV AMLARDKERL AALEAELPDA KAFVCDVSKE
EEIAAAVKQV RETMGAPEVF IHNAVGGTWG SFLEIDPKDL NGNFQVNTMA LLHFARALAP
SMIEAGKGTI IATGNTSAHR GKAFFAGFAP TKAAQRILAE AMARDLGPKG VHVAYVTIDA
VIDVPWTRER YKDAPDDFFI KPSAIADETW HVAHQDKSAW SFNVEIRPYR EIW
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