| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3647 |
|---|
| Symbol | |
|---|
| ID | 5455677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3902619 |
|---|
| End bp | 3903416 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640879231 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001414902 |
|---|
| Protein GI | 154254078 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1946] Acyl-CoA thioesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.51576 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00000000000126361 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAC CGACGAGAGA GCTGAACCCC GTATTCCGGC GCGATGGCGA GGTGTGGGCC
GCGCGGCCGG AAGCGCAAGG CCCCTTTGGC GGCATGCATG GCGGCGCGGT GGCGGCGCTC
GCCGTGGGCG AGATGGAAGC GATGGCGGGG CCGCGCGGGC TTGGCGGGCT CGTCTCGGCC
AATCTCTATC TGCTGAGGCC GCTGCCGCGC GAGGGGATTT CGAGCAAGGT GAGCGCGGTG
CGCGAGGGCG GACGGATTGC CGTGTTCGAG AACGAGCTAT GGGCGGATGG AAAATTGCAG
GCAAAGGCGA GTGCCTGCTT CCAGAAGCCT GTGACCATAG ACGGGCTGCC GGGAGCGCCA
ACCGAAGTGC TGTTCGAGCC GGAGGGTTTT TCCCGATGGG AGCGGCCGCC GGGCTTCAAC
AATTCGGGCA AGGATCACGG CTTTCTCGAT CTGGTCGATA TTCGCGACAC GACACATGAA
GACGGAACGC GGGCGAAGTG GTTTCGGCTG AAGCATCCGT TCCACGATGT ACCGACGCCT
TTTTCGAATG CGATGGCGGT GGCGGATGTG TCGACGCTTT TCACGGTGAC GGATGCGGGC
GCGCGGCCGA GCGCAAGCGG CTGGCCGAAT GCCGATCTTT CCTTTCATCT GTCGCGGGTG
CCAATCGACG AATGGATCGG CGTGGCGCAG CGCGGCTCGT GGCATGGCGA CGGACGCGGC
ATGACGGAGT CCGAGATTTT CGACGTTCAT GGACGGATCG GGCGGTCATG CCAGAGCGTG
GTGCTGCTGC CGCTTTGA
|
|---|
| Protein sequence | MNAPTRELNP VFRRDGEVWA ARPEAQGPFG GMHGGAVAAL AVGEMEAMAG PRGLGGLVSA
NLYLLRPLPR EGISSKVSAV REGGRIAVFE NELWADGKLQ AKASACFQKP VTIDGLPGAP
TEVLFEPEGF SRWERPPGFN NSGKDHGFLD LVDIRDTTHE DGTRAKWFRL KHPFHDVPTP
FSNAMAVADV STLFTVTDAG ARPSASGWPN ADLSFHLSRV PIDEWIGVAQ RGSWHGDGRG
MTESEIFDVH GRIGRSCQSV VLLPL
|
|---|
| |