| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3635 |
|---|
| Symbol | |
|---|
| ID | 5457042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3892381 |
|---|
| End bp | 3893607 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640879219 |
|---|
| Product | Beta-ketoacyl synthase |
|---|
| Protein accession | YP_001414890 |
|---|
| Protein GI | 154254066 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.000487969 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCGAG TCGTCGTCAC AGGCATGGGC ATCGTTTCCA GCATCGGAAA CAACACTCAA
GAAGTCGTCG GGAGCCTGCG TGAAGGCAAA TCCGGCATCG TGAGAGCCGA TACCTATGCG
GAGATGGGGT TCAGGAGCCA GGTGCATGGC AGCCTGAAGA TCAATCTCGA CGAGGCGGTG
GACCGGCGCG CGCGGCGCTT CATGGGCGAT GGCGCGGCCT ATGCCTGGAT CGCGATGGAA
CAGGCGATCC GCGATGCGGG GCTCGAGGAA AGCGATGTGA GCAACCCGCG CACGGGGCTC
ATCGTCGGTT CGGGCGGACC TTCGACCAAG GCGATCGTCG CCGCCGCCGA CATGGCGCGC
ACGGAGCCCG TGAAAGGCCC GAAGAAAGTC GGCCCCTTCG CGGTGCCGAA GGCGATGTCC
TCGACCTGCT CGGCCAATCT TTCGACCTGG TACAAGACCA AGGGCGTCAA CTACTCCATC
AGCTCGGCCT GCTCGACCTC GGCGAACTGC ATCGGCAATG CGGCCGAGAT GATACAGTGG
GGCAAGCAGG ACGTGATGTT TGCCGGCGGC GGCGAGGAAC TCGACTGGAC ATTGTCGGTG
CTCTTCGACG CGATGGGCGC GATGTCGGCG AAGCGGAACG ACACGCCGGA AAAGGCGAGC
CGCGCCTATG ACAAGGACCG CGACGGCTTC GTCATCACCG GCGGCGGCGG CATTCTCGTG
CTGGAAGAGC TCGAACACGC GAAGGCGCGC GGCGCGAAGA TCTATGCCGA GATCGTCGGC
TATGGCGCGA CGGCGGACGG CGCCGACATG GTGGCCCCTT CCGGCGAAGG CGCGGTGCGC
TGCATGAAGA TGGCGCTGCA GAACGTCAAA GAGAAAGTCG ACTACATCAA CCCGCATGCG
ACATCGACGC CTGTGGGCGA CATTCCCGAG ATCAACGCGA TCCGCGAAGT CTTCGGCGCC
GACATGCCGC CGATCAGCGC CACGAAATCG CTGACCGGCC ACGCACAGGG CGCGGCGGGC
GTTCACGAAG CCATCTACAC GCTGCTGATG ATGCAGTCCG GCTTCATAGC GGCGAGCGCC
AATATCGACG AGATCGACCC GGCGGTCGCC GACGCCAACA TTGCGCGGAC GCGCATCGAC
AATGCCGACA TCAATCTCGC GATCTCGAAC AGTTTCGGTT TCGGCGGCAC CAACGCGACG
CTGGCACTGC AACGCTATAA CGGGTGA
|
|---|
| Protein sequence | MRRVVVTGMG IVSSIGNNTQ EVVGSLREGK SGIVRADTYA EMGFRSQVHG SLKINLDEAV
DRRARRFMGD GAAYAWIAME QAIRDAGLEE SDVSNPRTGL IVGSGGPSTK AIVAAADMAR
TEPVKGPKKV GPFAVPKAMS STCSANLSTW YKTKGVNYSI SSACSTSANC IGNAAEMIQW
GKQDVMFAGG GEELDWTLSV LFDAMGAMSA KRNDTPEKAS RAYDKDRDGF VITGGGGILV
LEELEHAKAR GAKIYAEIVG YGATADGADM VAPSGEGAVR CMKMALQNVK EKVDYINPHA
TSTPVGDIPE INAIREVFGA DMPPISATKS LTGHAQGAAG VHEAIYTLLM MQSGFIAASA
NIDEIDPAVA DANIARTRID NADINLAISN SFGFGGTNAT LALQRYNG
|
|---|
| |