| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3607 |
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| Symbol | |
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| ID | 5454167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3861143 |
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| End bp | 3865144 |
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| Gene Length | 4002 bp |
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| Protein Length | 1333 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640879191 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001414862 |
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| Protein GI | 154254038 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGC GCAACCGAAC GGCCGCCGCG AGGCGCCGCC ACATCGCGGC ATTGATGCTC
GGCACCGCGC TTGCCGCGCT GCCTCATTCC GGCGCCAGTG CGGACTCGTT CTGGAGCGGC
GGTGCCGGCG ACTGGTTCGA TCCCGGCAAC TGGGCCGGTG GCGTGCCCGG TGCGGGCGAT
GTCGCCATCG TCAACAATGG TGGCACCGCA GAGATCGGCG CGGCGGGCGC TCTCTCCAGC
ATCGGCTCGG CGGGTGAAAC GGCGGGCAAC AGCGGCACCG TCGAAGTGGA CGGCGCCGGT
TCCACCTGGG CCATCGGCAA CACGCTCTAT ATCGGCAATT CCGGCACCGG CACACTCAAC
GTCACCAATG GCGGCGCGGT CTCCAATAAT AACGCGGCCA TCGGCACCAC CGCCACCGGC
AGCGGCACGG CAACGATCGA CGGCGCCGGT TCGACATGGA CGAACAGCGG TCAACTCACG
ATAGGCGGCG CTGGCGAAGG CGCGCTCGAA ATTTCCGGCG GCGGCGCGGT CTCGAACAAC
GAGGGCTCGA TCGGCAATCA GGCCGGCAGC ACCGGCGAAG TCGCGGTCGA TGGCATAGGG
TCGACATGGA CCAATTCTGG CGATCTCGTT GTCGGCGCCA GGAGCAACGG TACGCTTGGC
ATTTCGGGCG GTGGTGCCGT CTCGAATATG AGCGGCTTCA TCGGCGACCT TGCCGCCGGC
ATCGGCACCG TCACGGTCGA CGGCGCGGGT TCGACATGGA CCAACACCGG CGGCAACGGC
CTCAATGTCG GCTGGTCGGG GTCGGCGACG CTGGACATAT CGGACGGTGG CGCGGTCTCG
AGTTTGGCGG GTCATGTCGG AAGACAGGTG GGCAGCACCG GCACAGTCAC CGTCTCGGGC
GTGGATTCCG TCTGGTCCAT CGTCGGTGCG CTTCTCGTCG GCAATTACGG CGACGGCACG
CTGACCCTTT CCGATGGCGG TGCAGCCGAA GCAGCGTCCG TCACCATCGC CAGCAATGCT
TCCTCCACCG GCGCGCTGAA CATCGGCGCG GCCTCGGGCG ATGCCGCCGC TGCCGCAGGC
ATGCTCGACG CGGCATCGGT CGTCTTCGGC GCGGGCACGG GCATGCTGGT CTTCAACCAT
ACGAACAACG ACTATGCCTT TGATGCCGAT ATTTCGGGCG CCGGAAGCCT GCTGGTGCGA
AATGGCCGCA CGAGTCTCAC CGGCGCAAAC ACCTATACCG GCGGCACGGA GATCGCGGGC
GGCACGCTGA TCGGCAATAC GACGAGCCTC CAGGGTGATA TCGAATTCAC GACCCCTTCC
GGCCAACTGC ATTTCGATCA GTCTACGGAC GGTACGTTCT CGGGCTCTAT CGCGGGCGGT
TCCACCCGCG GCTATGTCGT GAAGCGCGGC ACAGGCGAGG TTGTCTTCGA CGAAACGAAT
ATCGACGTGA GCCTCGTCCA CGCCTCGGGT GGCACGCTCA TCGTCGATGG CGGCACCGTC
GCTGCCGATA CCATTCATTC CGGGTATCTA TCGGACGCCG GGCATCCGCT GGAATTTGCC
TCGCTCCATT TCACGGGCGG CGTAGAGGTG ACGAGCAACC ACGGCTCTGT CAGCAGCGAC
GACGACGATA CCGGCGCCGA AATCCGCCTC TCCGGTGCGG GCACGAAATG GACTGTCGGC
CGTGACAATG CGTGGACCAC TTTTTACGTG TGGGGCAATG GCGGCAGCCT TCTCTCGGTG
TCGGAAGGTG CGGAGCTCGA ACATTTCGGC ACTCTCGTCC TTGCCTCCCT CAGTCACGAT
ACGCCCGGCC GCATCGAGGT CGACGGTACG GGCTCGCTTC TCTCCTCGAC CGGGAGCATC
GATTTCGGCA ATCACGGGAC CGGACTTGTT ACGGTCTCGA ACGGCGGCCG TCTCGAAACC
GGCGGCGGAC CGGTCGGCAT GGGCTCCTCG CGCACAGGCA TCGTGACGAT CACCGGCGCG
GGCTCGGTCT GGCGGACGCT CGCGGATGAG GACGAGCGCG TCGAGCACGA TCTGATTCTC
GGCGGAAACG ATGAGTACAC CGTGGGCACT GGCCACATTT TTCTGTCCGA TGGCGGCCTG
CTGCGCCTCG GCGCCGGCGG CGACGGCACG ATCTTCGCCG CGTTAGGCGC AAATTCAGCG
GCAACCATCA ACATCGGCGC GGCGCAAGGC GAAGCGGCGG CGGGCGCGGG CACGCTCGAA
GCTGCCGAAA TCGAATTCGG CGATGCTGAT GGCGGCGACG GCCGCCTCGT CTTCAATCAC
ACCGCGCTCG AACATATCTT CGCACCCGTC GTTTCGGGCT TCGGCACCAT CATGCAGCTC
GCCGGCATCA CGCGGCTGAC AGGCTACAGC GAGAACTTCG AAGGCGATAC GCATGTCACC
GGCGGCACTC TCGTTATCGG CAATGCGCTG GGCGGCACGA TTCATGTCTC GGGCAGCGGA
CGCCTCGGCG GTACCGGCAA CGTCAACAAT GCCGTTGTCG GCGATGGCGG CATCTTCGCG
CCGGGCAACT CGGTCGGCGC CATGATTGCC TATGGCGATG TGACTTTCGG CGATGGCGCC
ATTTACGATG TCGAGGTCAA CGACGGCAGC AACACGCCCG GCATCGGCAA CGACTTCATC
GACATCGCCG GTTCGCTGAC GATCGACGGC GGGGCATCGG TTCATGTCTC GCCCGAGAAC
GGCACCGATG ACGGCACGAC CTACACACCC GGCCTCGTCT ACACGATCCT CTCGGCAACA
GGAGGCGTCA CCGGCGCCTT TGGCGCGGTG ACTGCCAGCT TTGCCTTTCT GACGCCTGAA
CTTTCCTACG ATGCCAACAA TGTTTTTCTC GAACTGGTGT TGAATCACGA CGGCGACGGC
GGCGATGCCG GCTTCGGCGA TGTCGCCAAT ACACAGAACC AGAAGGGTGT CGGCAACGCT
CTGGAGAACT TCGGGCCCGG CCATCCGCTC TACGACGAGA TCATCCTGAT GACCGAGGAG
GAAGCCCGCG CCGCCTATGA CGCGCTTTCG GGTGAGGCCC ATGCCAGTTC CGCGACCGCG
CAATTCATGA CCGCCGCCGA GATCCGCCAG CAATTGCTCG ACCGTCTCGC CGCGATCCTC
GGTTCGGGTG GCGGCGGACT GGCGAGCCTT GCCTATGCAC CGGCTGCGGG TGATGCCGTG
CCGGGCGCAG CCGCCATCTG GGGCCAGGTC TTCGGAAGCT GGGGCCGCAC GGACGGCAAC
GGCAATGCCG CCGAGATCGA CCGCGATGTC TATGGTTTCA TGGGCGGCAT CGACCGCGAG
GTCGCGCCGG GGGCGCAGGC CGGTCTCGCA TTCGGCTACA GCCGCTCGAC TTATGATGTC
GCTACGCGGT CGTCTTCGGG CGATAGCGAT AATTTTCACA TCGCGGGCTA TGCCGGCACG
GCGCTTGGCG CCTTCGACCT GAAGGGGGTC GTCTCCTACG CCTATGGCAC GGTCGACACC
CGCCGCACCG TCATCGCCGG TGGGCTGACG AATAATCTTG CGGCCGATTA CACGACGCAT
ACCTTCCAGG CGGGCGCCGA AGCCGGTTTC GATCTCGATA TCGGCCCCCT CGTGTTGACG
CCCTTCGCCG GGCTTGCCGG CATCCATGTC GAGACCGGGG GCTTCACCGA GACCGGCGGC
CCGGCCGCGC TGACCTTCGG CTCGACCTCC AGCACCACCG GCGTCTCGAC GCTGGGCCTC
CGCGCCCGCC GCCAGACCGG CCAGGTCGTG CTCGCGGGCT CGCTCGCCTG GCGCCATGCC
TTCGGCGATG TCGACCCCTC GTCGCGCGCC GCTTTCGCCT CCGCTCCCGC CGCCACCTTC
GCGGTCCGGG GCACGCCGAT CTCGGAAAAC GCCCTCGCCC TCGAAACCGG CATCGACCTG
AAGCTCGACA CCGGCACGAC CCTCACTTTC GGCTATGCTG GCGAATACGC CTCGGAAGCC
CGCGACCACG GGTTGAAGGC GGAACTGCGC TTCGAGTTCT GA
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| Protein sequence | MTARNRTAAA RRRHIAALML GTALAALPHS GASADSFWSG GAGDWFDPGN WAGGVPGAGD
VAIVNNGGTA EIGAAGALSS IGSAGETAGN SGTVEVDGAG STWAIGNTLY IGNSGTGTLN
VTNGGAVSNN NAAIGTTATG SGTATIDGAG STWTNSGQLT IGGAGEGALE ISGGGAVSNN
EGSIGNQAGS TGEVAVDGIG STWTNSGDLV VGARSNGTLG ISGGGAVSNM SGFIGDLAAG
IGTVTVDGAG STWTNTGGNG LNVGWSGSAT LDISDGGAVS SLAGHVGRQV GSTGTVTVSG
VDSVWSIVGA LLVGNYGDGT LTLSDGGAAE AASVTIASNA SSTGALNIGA ASGDAAAAAG
MLDAASVVFG AGTGMLVFNH TNNDYAFDAD ISGAGSLLVR NGRTSLTGAN TYTGGTEIAG
GTLIGNTTSL QGDIEFTTPS GQLHFDQSTD GTFSGSIAGG STRGYVVKRG TGEVVFDETN
IDVSLVHASG GTLIVDGGTV AADTIHSGYL SDAGHPLEFA SLHFTGGVEV TSNHGSVSSD
DDDTGAEIRL SGAGTKWTVG RDNAWTTFYV WGNGGSLLSV SEGAELEHFG TLVLASLSHD
TPGRIEVDGT GSLLSSTGSI DFGNHGTGLV TVSNGGRLET GGGPVGMGSS RTGIVTITGA
GSVWRTLADE DERVEHDLIL GGNDEYTVGT GHIFLSDGGL LRLGAGGDGT IFAALGANSA
ATINIGAAQG EAAAGAGTLE AAEIEFGDAD GGDGRLVFNH TALEHIFAPV VSGFGTIMQL
AGITRLTGYS ENFEGDTHVT GGTLVIGNAL GGTIHVSGSG RLGGTGNVNN AVVGDGGIFA
PGNSVGAMIA YGDVTFGDGA IYDVEVNDGS NTPGIGNDFI DIAGSLTIDG GASVHVSPEN
GTDDGTTYTP GLVYTILSAT GGVTGAFGAV TASFAFLTPE LSYDANNVFL ELVLNHDGDG
GDAGFGDVAN TQNQKGVGNA LENFGPGHPL YDEIILMTEE EARAAYDALS GEAHASSATA
QFMTAAEIRQ QLLDRLAAIL GSGGGGLASL AYAPAAGDAV PGAAAIWGQV FGSWGRTDGN
GNAAEIDRDV YGFMGGIDRE VAPGAQAGLA FGYSRSTYDV ATRSSSGDSD NFHIAGYAGT
ALGAFDLKGV VSYAYGTVDT RRTVIAGGLT NNLAADYTTH TFQAGAEAGF DLDIGPLVLT
PFAGLAGIHV ETGGFTETGG PAALTFGSTS STTGVSTLGL RARRQTGQVV LAGSLAWRHA
FGDVDPSSRA AFASAPAATF AVRGTPISEN ALALETGIDL KLDTGTTLTF GYAGEYASEA
RDHGLKAELR FEF
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